* using log directory ‘/data/gannet/ripley/R/packages/tests-clang-SAN/tcie.Rcheck’ * using R Under development (unstable) (2019-05-15 r76504) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘tcie/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘tcie’ version ‘0.3’ * package encoding: UTF-8 * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘tcie’ can be installed ... [71s/100s] OK * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking compiled code ... OK * checking examples ... ERROR Running examples in ‘tcie-Ex.R’ failed The error most likely occurred in: > ### Name: Clipping > ### Title: Builds and plots the mesh representing the desired isosurface of > ### an specific region of the dataset > ### Aliases: Clipping > > ### ** Examples > > Clipping(system.file("extdata","f3.nhdr",package ="tcie"),0,FALSE,"red",1,TRUE,c(2,3),c(2,4),c(2,4)) ================================================================= ==11926==ERROR: AddressSanitizer: alloc-dealloc-mismatch (malloc vs operator delete []) on 0x604000019890 #0 0x541548 in operator delete[](void*) /data/gannet/ripley/Sources/LLVM/8.0.0/llvm-8.0.0.src/projects/compiler-rt/lib/asan/asan_new_delete.cc:170:3 #1 0x7f281d7fedea in leaf_triangulation() /data/gannet/ripley/R/packages/tests-clang-SAN/tcie/src/ExtendedMC.cpp:596:30 #2 0x7f281d8154dd in find_topology() /data/gannet/ripley/R/packages/tests-clang-SAN/tcie/src/ExtendedMC.cpp:1823:5 #3 0x7f281d82c88a in ExtendedRunMC(arma::Cube, float, int, int, int, float, float, float) /data/gannet/ripley/R/packages/tests-clang-SAN/tcie/src/ExtendedMC.cpp:2600:56 #4 0x7f281d865c3b in _tcie_ExtendedRunMC /data/gannet/ripley/R/packages/tests-clang-SAN/tcie/src/RcppExports.cpp:23:34 #5 0x77834b in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c #6 0x8dc6e6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7283:21 #7 0x8c1ad7 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #8 0x91e84b in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #9 0x91ba3f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #10 0x8e1bfa in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6733:12 #11 0x8c1ad7 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #12 0x91e84b in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #13 0x91ba3f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #14 0x8c2bf9 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743:12 #15 0x9f46f3 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:260:2 #16 0x9f8a50 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:310:11 #17 0x9f8835 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1086:5 #18 0x5439ba in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5 #19 0x7f282b7a111a in __libc_start_main (/lib64/libc.so.6+0x2311a) #20 0x42f4f9 in _start (/data/gannet/ripley/R/R-clang-SAN/bin/exec/R+0x42f4f9) 0x604000019890 is located 0 bytes inside of 48-byte region [0x604000019890,0x6040000198c0) allocated by thread T0 here: #0 0x502e07 in __interceptor_malloc /data/gannet/ripley/Sources/LLVM/8.0.0/llvm-8.0.0.src/projects/compiler-rt/lib/asan/asan_malloc_linux.cc:146:3 #1 0x7f281d7ecd19 in Chull3D::get_convex_hull(float**, int*, int**, int*) /data/gannet/ripley/R/packages/tests-clang-SAN/tcie/src/./chull.cpp:130:32 #2 0x7f281d7fcc21 in leaf_triangulation() /data/gannet/ripley/R/packages/tests-clang-SAN/tcie/src/ExtendedMC.cpp:573:15 #3 0x7f281d8154dd in find_topology() /data/gannet/ripley/R/packages/tests-clang-SAN/tcie/src/ExtendedMC.cpp:1823:5 #4 0x7f281d82c88a in ExtendedRunMC(arma::Cube, float, int, int, int, float, float, float) /data/gannet/ripley/R/packages/tests-clang-SAN/tcie/src/ExtendedMC.cpp:2600:56 #5 0x7f281d865c3b in _tcie_ExtendedRunMC /data/gannet/ripley/R/packages/tests-clang-SAN/tcie/src/RcppExports.cpp:23:34 #6 0x77834b in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c #7 0x8dc6e6 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7283:21 #8 0x8c1ad7 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #9 0x91e84b in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #10 0x91ba3f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #11 0x8e1bfa in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6733:12 #12 0x8c1ad7 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #13 0x91e84b in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #14 0x91ba3f in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #15 0x8c2bf9 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743:12 #16 0x9f46f3 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:260:2 #17 0x9f8a50 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:310:11 #18 0x9f8835 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1086:5 #19 0x5439ba in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5 #20 0x7f282b7a111a in __libc_start_main (/lib64/libc.so.6+0x2311a) SUMMARY: AddressSanitizer: alloc-dealloc-mismatch /data/gannet/ripley/Sources/LLVM/8.0.0/llvm-8.0.0.src/projects/compiler-rt/lib/asan/asan_new_delete.cc:170:3 in operator delete[](void*) ==11926==HINT: if you don't care about these errors you may set ASAN_OPTIONS=alloc_dealloc_mismatch=0 ==11926==ABORTING * DONE Status: 1 ERROR