* using log directory ‘/data/gannet/ripley/R/packages/tests-clang-ASAN/stringdist.Rcheck’
* using R Under development (unstable) (2025-12-30 r89261)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 21.1.8
    flang version 21.1.8
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘stringdist/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘stringdist’ version ‘0.9.15’
* package encoding: UTF-8
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package ‘stringdist’ can be installed ... [19s/23s] OK
* used C compiler: ‘clang version 21.1.8’
* checking package directory ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘stringdist-Ex.R’ failed
The error most likely occurred in:

> ### Name: seq_sim
> ### Title: Compute similarity scores between sequences of integers
> ### Aliases: seq_sim
> 
> ### ** Examples
> 
> L1 <- list(1:3,2:4)
> L2 <- list(1:3)
> seq_sim(L1,L2,method="osa")
=================================================================
==2920311==ERROR: AddressSanitizer: heap-buffer-overflow on address 0x7f960bd9b7f8 at pc 0x556d078f128e bp 0x7ffeacb28390 sp 0x7ffeacb28388
WRITE of size 8 at 0x7f960bd9b7f8 thread T0
    #0 0x556d078f128d in Rf_protect /data/gannet/ripley/R/svn/R-devel/src/include/Rinlinedfuns.h:496:28
    #1 0x556d0790d0f9 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:15
    #2 0x556d0790f940 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317:11
    #3 0x556d0790f940 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235:5
    #4 0x556d0790f9d2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242:5
    #5 0x556d0761513c in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5
    #6 0x7f960df135f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #7 0x7f960df136a7 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #8 0x556d0752d7e4 in _start (/data/gannet/ripley/R/clang-ASAN/bin/exec/R+0x17e4)

0x7f960bd9b7f8 is located 8 bytes before 408000-byte region [0x7f960bd9b800,0x7f960bdff1c0)
allocated by thread T0 here:
    #0 0x556d075d2104 in malloc /data/gannet/ripley/Sources2/LLVM/21/latest/compiler-rt/lib/asan/asan_malloc_linux.cpp:67:3
    #1 0x556d0793194a in Rf_InitMemory /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:2223:32
    #2 0x556d0790e469 in setup_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:984:5
    #3 0x556d0790f9c8 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1241:5
    #4 0x556d0761513c in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5
    #5 0x7f960df135f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #6 0x7f960df136a7 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #7 0x556d0752d7e4 in _start (/data/gannet/ripley/R/clang-ASAN/bin/exec/R+0x17e4)

SUMMARY: AddressSanitizer: heap-buffer-overflow /data/gannet/ripley/R/svn/R-devel/src/include/Rinlinedfuns.h:496:28 in Rf_protect
Shadow bytes around the buggy address:
  0x7f960bd9b500: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7f960bd9b580: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7f960bd9b600: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7f960bd9b680: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7f960bd9b700: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
=>0x7f960bd9b780: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa[fa]
  0x7f960bd9b800: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7f960bd9b880: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7f960bd9b900: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7f960bd9b980: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7f960bd9ba00: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
Shadow byte legend (one shadow byte represents 8 application bytes):
  Addressable:           00
  Partially addressable: 01 02 03 04 05 06 07 
  Heap left redzone:       fa
  Freed heap region:       fd
  Stack left redzone:      f1
  Stack mid redzone:       f2
  Stack right redzone:     f3
  Stack after return:      f5
  Stack use after scope:   f8
  Global redzone:          f9
  Global init order:       f6
  Poisoned by user:        f7
  Container overflow:      fc
  Array cookie:            ac
  Intra object redzone:    bb
  ASan internal:           fe
  Left alloca redzone:     ca
  Right alloca redzone:    cb
==2920311==ABORTING
* checking tests ... OK
  Running ‘tinytest.R’
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [56s/64s] OK
* DONE
Status: 1 ERROR