* using log directory ‘/data/gannet/ripley/R/packages/tests-clang-SAN/phmm.Rcheck’ * using R Under development (unstable) (2020-03-30 r78112) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘phmm/DESCRIPTION’ ... OK * this is package ‘phmm’ version ‘0.7-14’ * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘phmm’ can be installed ... [48s/57s] OK * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking tests ... [13s/16s] ERROR Running ‘testthat.R’ [12s/15s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(phmm) Loading required package: survival Loading required package: lattice Loading required package: Matrix > > test_check("phmm") phmm.c:501:3: runtime error: index 2 out of bounds for type 'double *[nreff + 1]' #0 0x7f4174538d1b in Estep /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:501:11 #1 0x7f4174532fd9 in EM /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:380:3 #2 0x7f417452c7f9 in phmm /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:181:3 #3 0x7450e8 in do_dotCode /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c #4 0x8417d0 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090:14 #5 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #6 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #7 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #8 0x8225d2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846:12 #9 0x8965e3 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2956:8 #10 0x821dec in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:798:12 #11 0x8954a2 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2507:10 #12 0x821dec in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:798:12 #13 0x89bad3 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3331:13 #14 0x8417d0 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090:14 #15 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #16 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #17 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #18 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #19 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #20 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #21 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #22 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #23 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #24 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #25 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #26 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #27 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #28 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #29 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #30 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #31 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #32 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #33 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #34 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #35 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #36 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #37 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #38 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #39 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #40 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #41 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #42 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #43 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #44 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #45 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #46 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #47 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #48 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #49 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #50 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #51 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #52 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #53 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #54 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #55 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #56 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #57 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #58 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #59 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #60 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #61 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #62 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #63 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #64 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #65 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #66 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #67 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #68 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #69 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #70 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #71 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #72 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #73 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #74 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #75 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #76 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #77 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #78 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #79 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #80 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #81 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #82 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #83 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #84 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #85 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #86 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #87 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #88 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #89 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #90 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #91 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #92 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #93 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #94 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #95 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #96 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #97 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #98 0x8225d2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846:12 #99 0x89c38d in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3354:9 #100 0x8417d0 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090:14 #101 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #102 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #103 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #104 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #105 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #106 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #107 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #108 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #109 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #110 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #111 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #112 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #113 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #114 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #115 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #116 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #117 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #118 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #119 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #120 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #121 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #122 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #123 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #124 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #125 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #126 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #127 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #128 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #129 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #130 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #131 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #132 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #133 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #134 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #135 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #136 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #137 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #138 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #139 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #140 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #141 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #142 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #143 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #144 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #145 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #146 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #147 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #148 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #149 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #150 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #151 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #152 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #153 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #154 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #155 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #156 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #157 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #158 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #159 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #160 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #161 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #162 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #163 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #164 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #165 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #166 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #167 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #168 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #169 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #170 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #171 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #172 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #173 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #174 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #175 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #176 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #177 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #178 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #179 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #180 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #181 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #182 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #183 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #184 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #185 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #186 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #187 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #188 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #189 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #190 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #191 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #192 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #193 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #194 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #195 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #196 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #197 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #198 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #199 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #200 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #201 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #202 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #203 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #204 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #205 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #206 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #207 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #208 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #209 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #210 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #211 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #212 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #213 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #214 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #215 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #216 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #217 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #218 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #219 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #220 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #221 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #222 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #223 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #224 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #225 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #226 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #227 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #228 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #229 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #230 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #231 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #232 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #233 0x88d0bf in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1955:8 #234 0x524372 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:70:8 #235 0x9a4720 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1384:11 #236 0x83eced in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7110:15 #237 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #238 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #239 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #240 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #241 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #242 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #243 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #244 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #245 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #246 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #247 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #248 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #249 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #250 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #251 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #252 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #253 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #254 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #255 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #256 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #257 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #258 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #259 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #260 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #261 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #262 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #263 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #264 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #265 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #266 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #267 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #268 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #269 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #270 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #271 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #272 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #273 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #274 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #275 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #276 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #277 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior phmm.c:501:3 in ================================================================= ==23930==ERROR: AddressSanitizer: dynamic-stack-buffer-overflow on address 0x7fff1e20df30 at pc 0x7f41745405a4 bp 0x7fff1e20def0 sp 0x7fff1e20dee8 WRITE of size 8 at 0x7fff1e20df30 thread T0 #0 0x7f41745405a3 in Estep /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:501:11 #1 0x7f4174532fd9 in EM /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:380:3 #2 0x7f417452c7f9 in phmm /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:181:3 #3 0x7450e8 in do_dotCode /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c #4 0x8417d0 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090:14 #5 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #6 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #7 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #8 0x8225d2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846:12 #9 0x8965e3 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2956:8 #10 0x821dec in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:798:12 #11 0x8954a2 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2507:10 #12 0x821dec in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:798:12 #13 0x89bad3 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3331:13 #14 0x8417d0 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090:14 #15 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #16 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #17 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #18 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #19 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #20 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #21 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #22 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #23 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #24 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #25 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #26 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #27 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #28 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #29 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #30 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #31 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #32 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #33 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #34 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #35 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #36 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #37 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #38 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #39 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #40 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #41 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #42 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #43 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #44 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #45 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #46 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #47 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #48 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #49 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #50 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #51 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #52 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #53 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #54 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #55 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #56 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #57 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #58 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #59 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #60 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #61 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #62 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #63 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #64 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #65 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #66 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #67 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #68 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #69 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #70 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #71 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #72 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #73 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #74 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #75 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #76 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #77 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #78 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #79 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #80 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #81 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #82 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #83 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #84 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #85 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #86 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #87 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #88 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #89 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #90 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #91 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #92 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #93 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #94 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #95 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #96 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #97 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #98 0x8225d2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846:12 #99 0x89c38d in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3354:9 #100 0x8417d0 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090:14 #101 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #102 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #103 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #104 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #105 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #106 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #107 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #108 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #109 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #110 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #111 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #112 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #113 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #114 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #115 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #116 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #117 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #118 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #119 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #120 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #121 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #122 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #123 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #124 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #125 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #126 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #127 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #128 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #129 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #130 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #131 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #132 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #133 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #134 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #135 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #136 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #137 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #138 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #139 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #140 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #141 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #142 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #143 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #144 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #145 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #146 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #147 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #148 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #149 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #150 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #151 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #152 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #153 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #154 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #155 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #156 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #157 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #158 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #159 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #160 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #161 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #162 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #163 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #164 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #165 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #166 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #167 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #168 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #169 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #170 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #171 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #172 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #173 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #174 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #175 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #176 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #177 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #178 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #179 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #180 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #181 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #182 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #183 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #184 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #185 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #186 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #187 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #188 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #189 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #190 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #191 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #192 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #193 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #194 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #195 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #196 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #197 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #198 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #199 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #200 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #201 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #202 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #203 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #204 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #205 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #206 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #207 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #208 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #209 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #210 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #211 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #212 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #213 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #214 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #215 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #216 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #217 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #218 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #219 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #220 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #221 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #222 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #223 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #224 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #225 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #226 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #227 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #228 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #229 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #230 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #231 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #232 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #233 0x88d0bf in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1955:8 #234 0x524372 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:70:8 #235 0x9a4720 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1384:11 #236 0x83eced in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7110:15 #237 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #238 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #239 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #240 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #241 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #242 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #243 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #244 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #245 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #246 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #247 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #248 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #249 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #250 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #251 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #252 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #253 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #254 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #255 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #256 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #257 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #258 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #259 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #260 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #261 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #262 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #263 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #264 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #265 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #266 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #267 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #268 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #269 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #270 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #271 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #272 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #273 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #274 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #275 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c Address 0x7fff1e20df30 is located in stack of thread T0 SUMMARY: AddressSanitizer: dynamic-stack-buffer-overflow /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:501:11 in Estep Shadow bytes around the buggy address: 0x100063c39b90: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x100063c39ba0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x100063c39bb0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x100063c39bc0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x100063c39bd0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 =>0x100063c39be0: ca ca ca ca 00 00[cb]cb cb cb cb cb ca ca ca ca 0x100063c39bf0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x100063c39c00: 00 00 00 00 cb cb cb cb ca ca ca ca 00 00 00 00 0x100063c39c10: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x100063c39c20: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x100063c39c30: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb Shadow gap: cc ==23930==ABORTING * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [12s/16s] WARNING Error(s) in re-building vignettes: --- re-building ‘phmm_poisson_df.Rmd’ using rmarkdown Loading required package: survival Loading required package: lattice Loading required package: Matrix phmm.c:501:3: runtime error: index 4 out of bounds for type 'double *[nreff + 1]' #0 0x7f1d8aacbd1b in Estep /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:501:11 #1 0x7f1d8aac5fd9 in EM /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:380:3 #2 0x7f1d8aabf7f9 in phmm /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:181:3 #3 0x7450e8 in do_dotCode /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c #4 0x8417d0 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090:14 #5 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #6 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #7 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #8 0x8225d2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846:12 #9 0x8965e3 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2956:8 #10 0x821dec in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:798:12 #11 0x89bad3 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3331:13 #12 0x8417d0 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090:14 #13 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #14 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #15 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #16 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #17 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #18 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #19 0x82270f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:746:9 #20 0x89d6e4 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3383:9 #21 0x9a4720 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1384:11 #22 0x83eced in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7110:15 #23 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #24 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #25 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #26 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #27 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #28 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #29 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #30 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #31 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #32 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #33 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #34 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #35 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #36 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #37 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #38 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #39 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #40 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #41 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #42 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #43 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #44 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #45 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #46 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #47 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #48 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #49 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #50 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #51 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #52 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #53 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #54 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #55 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #56 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #57 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #58 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #59 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #60 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #61 0x8225d2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846:12 #62 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #63 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #64 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #65 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #66 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #67 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #68 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #69 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #70 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #71 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #72 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #73 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #74 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #75 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #76 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #77 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #78 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #79 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #80 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #81 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #82 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #83 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #84 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #85 0x9adde4 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436:16 #86 0x9acc1f in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476:10 #87 0x9aef43 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565:9 #88 0x83eced in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7110:15 #89 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #90 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #91 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #92 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #93 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #94 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #95 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #96 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #97 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #98 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #99 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #100 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #101 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #102 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #103 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #104 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #105 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #106 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #107 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #108 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #109 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #110 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #111 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #112 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #113 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #114 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #115 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #116 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #117 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #118 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #119 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #120 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #121 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #122 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #123 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #124 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #125 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #126 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #127 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #128 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #129 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #130 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #131 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #132 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #133 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #134 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #135 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #136 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #137 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #138 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #139 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #140 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #141 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #142 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #143 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #144 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #145 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #146 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #147 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #148 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #149 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #150 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #151 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #152 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #153 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #154 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #155 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #156 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #157 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #158 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #159 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #160 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #161 0x8225d2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846:12 #162 0x956f79 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:2 #163 0x95b3e0 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314:11 #164 0x95b1c5 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113:5 #165 0x4dbb4a in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5 #166 0x7f1d9f6a2f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #167 0x43036d in _start (/data/gannet/ripley/R/R-clang-SAN/bin/exec/R+0x43036d) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior phmm.c:501:3 in ================================================================= ==24937==ERROR: AddressSanitizer: dynamic-stack-buffer-overflow on address 0x7ffe6db40f20 at pc 0x7f1d8aad35a4 bp 0x7ffe6db40ed0 sp 0x7ffe6db40ec8 WRITE of size 8 at 0x7ffe6db40f20 thread T0 #0 0x7f1d8aad35a3 in Estep /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:501:11 #1 0x7f1d8aac5fd9 in EM /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:380:3 #2 0x7f1d8aabf7f9 in phmm /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:181:3 #3 0x7450e8 in do_dotCode /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c #4 0x8417d0 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090:14 #5 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #6 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #7 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #8 0x8225d2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846:12 #9 0x8965e3 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2956:8 #10 0x821dec in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:798:12 #11 0x89bad3 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3331:13 #12 0x8417d0 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7090:14 #13 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #14 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #15 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #16 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #17 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #18 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #19 0x82270f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:746:9 #20 0x89d6e4 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3383:9 #21 0x9a4720 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1384:11 #22 0x83eced in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7110:15 #23 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #24 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #25 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #26 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #27 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #28 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #29 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #30 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #31 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #32 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #33 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #34 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #35 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #36 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #37 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #38 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #39 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #40 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #41 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #42 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #43 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #44 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #45 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #46 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #47 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #48 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #49 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #50 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #51 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #52 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #53 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #54 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #55 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #56 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #57 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #58 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #59 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #60 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #61 0x8225d2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846:12 #62 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #63 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #64 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #65 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #66 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #67 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #68 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #69 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #70 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #71 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #72 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #73 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #74 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #75 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #76 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #77 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #78 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #79 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #80 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #81 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #82 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #83 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #84 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #85 0x9adde4 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436:16 #86 0x9acc1f in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476:10 #87 0x9aef43 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565:9 #88 0x83eced in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7110:15 #89 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #90 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #91 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #92 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #93 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #94 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #95 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #96 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #97 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #98 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #99 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #100 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #101 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #102 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #103 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #104 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #105 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #106 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #107 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #108 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #109 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #110 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #111 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #112 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #113 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #114 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #115 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #116 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #117 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #118 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #119 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #120 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #121 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #122 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #123 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #124 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #125 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #126 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #127 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #128 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #129 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #130 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #131 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #132 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #133 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #134 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #135 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #136 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #137 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #138 0x882b96 in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:551:8 #139 0x8b4066 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5123:15 #140 0x8b4066 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5164:14 #141 0x857c25 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6842:20 #142 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #143 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #144 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #145 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #146 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #147 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #148 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #149 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #150 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #151 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #152 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #153 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #154 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #155 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #156 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #157 0x84430e in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7058:12 #158 0x821799 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723:8 #159 0x889ceb in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #160 0x885147 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814:16 #161 0x8225d2 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846:12 #162 0x956f79 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:2 #163 0x95b3e0 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314:11 #164 0x95b1c5 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113:5 #165 0x4dbb4a in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5 #166 0x7f1d9f6a2f42 in __libc_start_main (/lib64/libc.so.6+0x23f42) #167 0x43036d in _start (/data/gannet/ripley/R/R-clang-SAN/bin/exec/R+0x43036d) Address 0x7ffe6db40f20 is located in stack of thread T0 SUMMARY: AddressSanitizer: dynamic-stack-buffer-overflow /data/gannet/ripley/R/packages/tests-clang-SAN/phmm/src/phmm.c:501:11 in Estep Shadow bytes around the buggy address: 0x10004db60190: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10004db601a0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10004db601b0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10004db601c0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10004db601d0: 00 00 00 00 00 00 00 00 00 00 00 00 ca ca ca ca =>0x10004db601e0: 00 00 00 00[cb]cb cb cb ca ca ca ca 00 00 00 00 0x10004db601f0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10004db60200: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10004db60210: 00 00 00 00 cb cb cb cb ca ca ca ca 00 00 00 00 0x10004db60220: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x10004db60230: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb Shadow gap: cc ==24937==ABORTING * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING