R Under development (unstable) (2026-10-23 r90760) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(nethist)
> 
> test_check("nethist")
=================================================================
==3748292==ERROR: AddressSanitizer: heap-use-after-free on address 0x7eb62f9c96d0 at pc 0x7bf620720add bp 0x7ffe05f65360 sp 0x7ffe05f65358
READ of size 4 at 0x7eb62f9c96d0 thread T0
    #0 0x7bf620720adc in Assignment::update_thetahat(arma::Col<unsigned int> const&, arma::Cube<int> const&) /data/localhost/ripley/R/packages/tests-clang-ASAN/nethist/src/Assignment.cpp:121:12
    #1 0x7bf62071e9a3 in Assignment::create_proposal_from(Assignment const&, arma::Cube<int> const&, int const&) /data/localhost/ripley/R/packages/tests-clang-ASAN/nethist/src/Assignment.cpp:48:3
    #2 0x7bf620765d93 in multinethist_fastgreedy(arma::Cube<int> const&, int const&, arma::Col<unsigned int> const&, int const&, int const&, int const&, bool const&) /data/localhost/ripley/R/packages/tests-clang-ASAN/nethist/src/multinethist_fastgreedy.cpp:24:14
    #3 0x7bf62074376f in _nethist_multinethist_fastgreedy /data/localhost/ripley/R/packages/tests-clang-ASAN/nethist/src/RcppExports.cpp:39:34
    #4 0x5614d9aa509e in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c
    #5 0x5614d9b69a8a in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704:21
    #6 0x5614d9b51af4 in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #7 0x5614d9b50081 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #8 0x5614d9b9881c in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #9 0x5614d9b979d8 in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #10 0x5614d9b5313e in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #11 0x5614d9c5f144 in dispatchMethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:473:16
    #12 0x5614d9c5dc54 in Rf_usemethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:513:10
    #13 0x5614d9c603a4 in do_usemethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:579:9
    #14 0x5614d9b63cf3 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170:15
    #15 0x5614d9b51af4 in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #16 0x5614d9b50081 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #17 0x5614d9b9881c in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #18 0x5614d9b979d8 in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #19 0x5614d9b5313e in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #20 0x5614d9b50aa8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #21 0x5614d9b5238a in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976:13
    #22 0x5614d9b7cf1d in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5867:6
    #23 0x5614d9b7cf1d in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7880:20
    #24 0x5614d9b51af4 in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #25 0x5614d9b50081 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #26 0x5614d9b9881c in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #27 0x5614d9b979d8 in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #28 0x5614d9b5313e in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #29 0x5614d9b50aa8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #30 0x5614d9ba9945 in do_set /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3585:8
    #31 0x5614d9b505c0 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #32 0x5614d9baed2a in do_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:3993:9
    #33 0x5614d9b5e4ea in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8150:14
    #34 0x5614d9b51af4 in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #35 0x5614d9b50081 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #36 0x5614d9b9881c in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #37 0x5614d9b979d8 in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #38 0x5614d9ba14c4 in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #39 0x5614d9ba14c4 in R_forceAndCall /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2465:8
    #40 0x5614d9956241 in do_lapply /data/localhost/ripley/R/svn/R-devel/src/main/apply.c:75:8
    #41 0x5614d9c587b9 in do_internal /data/localhost/ripley/R/svn/R-devel/src/main/names.c:1425:11
    #42 0x5614d9b63cf3 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170:15
    #43 0x5614d9b51af4 in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #44 0x5614d9b50081 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #45 0x5614d9b9881c in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #46 0x5614d9b979d8 in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #47 0x5614d9b5313e in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #48 0x5614d9b50aa8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #49 0x5614d9c21fb1 in Rf_ReplIteration /data/localhost/ripley/R/svn/R-devel/src/main/main.c:264:23
    #50 0x5614d9c247e0 in R_ReplConsole /data/localhost/ripley/R/svn/R-devel/src/main/main.c:319:11
    #51 0x5614d9c247e0 in run_Rmainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1239:5
    #52 0x5614d9c24872 in Rf_mainloop /data/localhost/ripley/R/svn/R-devel/src/main/main.c:1246:5
    #53 0x5614d9922a9c in main /data/localhost/ripley/R/svn/R-devel/src/main/Rmain.c:29:5
    #54 0x7ff632c0a680 in __libc_start_call_main (/lib64/libc.so.6+0x3680) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c)
    #55 0x7ff632c0a797 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3797) (BuildId: 85075e2ae2e13352a1413d41c327dacf6461526c)
    #56 0x5614d98327d4 in _start (/data/localhost/ripley/R/clang-ASAN/bin/exec/R+0x17d4)

0x7eb62f9c96d0 is located 5328 bytes inside of 28848-byte region [0x7eb62f9c8200,0x7eb62f9cf2b0)
freed by thread T0 here:
    #0 0x5614d98e0876 in free /data/localhost/ripley/Sources/LLVM/23/latest/compiler-rt/lib/asan/asan_malloc_linux.cpp:51:3
    #1 0x5614d9c3f64b in ReleaseLargeFreeVectors /data/localhost/ripley/R/svn/R-devel/src/main/memory.c:1167:7
    #2 0x5614d9c3f64b in RunGenCollect /data/localhost/ripley/R/svn/R-devel/src/main/memory.c:1953:5
    #3 0x5614d9c3250b in R_gc_internal /data/localhost/ripley/R/svn/R-devel/src/main/memory.c:3240:19
    #4 0x5614d9c2c8e4 in Rf_allocVector3 /data/localhost/ripley/R/svn/R-devel/src/main/memory.c:2713:3
    #5 0x5614d99f0263 in Rf_allocVector /data/localhost/ripley/R/svn/R-devel/src/include/Rinlinedfuns.h:609:12
    #6 0x5614d99f0263 in coerceToReal /data/localhost/ripley/R/svn/R-devel/src/main/coerce.c:564:19
    #7 0x5614d99ec06a in Rf_coerceVector /data/localhost/ripley/R/svn/R-devel/src/main/coerce.c:1289:12
    #8 0x7bf6207490e6 in SEXPREC* Rcpp::internal::basic_cast<14>(SEXPREC*) /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/r_cast.h:66:24
    #9 0x7bf620789ee3 in SEXPREC* Rcpp::internal::r_true_cast<14>(SEXPREC*) /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/r_cast.h:90:20
    #10 0x7bf620789ee3 in SEXPREC* Rcpp::r_cast<14>(SEXPREC*) /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/r_cast.h:170:20
    #11 0x7bf620789ee3 in unsigned int Rcpp::internal::primitive_as<unsigned int>(SEXPREC*) /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/as.h:36:28
    #12 0x7bf620779ec9 in unsigned int Rcpp::internal::as<unsigned int>(SEXPREC*, Rcpp::traits::r_type_primitive_tag) /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/as.h:43:20
    #13 0x7bf620779ec9 in unsigned int Rcpp::as<unsigned int>(SEXPREC*) /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/as.h:151:16
    #14 0x7bf620779ec9 in sample_node_by_swap_rule(int const&, int const&) /data/localhost/ripley/R/packages/tests-clang-ASAN/nethist/src/nethist_utils.cpp:31:12
    #15 0x7bf620779a61 in select_swap(Assignment const&, int const&, int const&) /data/localhost/ripley/R/packages/tests-clang-ASAN/nethist/src/nethist_utils.cpp:13:32
    #16 0x7bf62071e868 in Assignment::create_proposal_from(Assignment const&, arma::Cube<int> const&, int const&) /data/localhost/ripley/R/packages/tests-clang-ASAN/nethist/src/Assignment.cpp:43:27
    #17 0x7bf620765d93 in multinethist_fastgreedy(arma::Cube<int> const&, int const&, arma::Col<unsigned int> const&, int const&, int const&, int const&, bool const&) /data/localhost/ripley/R/packages/tests-clang-ASAN/nethist/src/multinethist_fastgreedy.cpp:24:14
    #18 0x7bf62074376f in _nethist_multinethist_fastgreedy /data/localhost/ripley/R/packages/tests-clang-ASAN/nethist/src/RcppExports.cpp:39:34
    #19 0x5614d9aa509e in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c
    #20 0x5614d9b69a8a in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704:21
    #21 0x5614d9b51af4 in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #22 0x5614d9b50081 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #23 0x5614d9b9881c in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #24 0x5614d9b979d8 in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #25 0x5614d9b5313e in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #26 0x5614d9c5f144 in dispatchMethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:473:16
    #27 0x5614d9c5dc54 in Rf_usemethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:513:10
    #28 0x5614d9c603a4 in do_usemethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:579:9
    #29 0x5614d9b63cf3 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170:15
    #30 0x5614d9b51af4 in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #31 0x5614d9b50081 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #32 0x5614d9b9881c in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #33 0x5614d9b979d8 in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #34 0x5614d9b5313e in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #35 0x5614d9b50aa8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278:12

previously allocated by thread T0 here:
    #0 0x5614d98e0e44 in malloc /data/localhost/ripley/Sources/LLVM/23/latest/compiler-rt/lib/asan/asan_malloc_linux.cpp:109:3
    #1 0x5614d9c2cffd in Rf_allocVector3 /data/localhost/ripley/R/svn/R-devel/src/main/memory.c:2897:7
    #2 0x5614d99ef764 in Rf_allocVector /data/localhost/ripley/R/svn/R-devel/src/include/Rinlinedfuns.h:609:12
    #3 0x5614d99ef764 in coerceToInteger /data/localhost/ripley/R/svn/R-devel/src/main/coerce.c:511:19
    #4 0x5614d99ec0ab in Rf_coerceVector /data/localhost/ripley/R/svn/R-devel/src/main/coerce.c:1287:12
    #5 0x7bf62074fb26 in SEXPREC* Rcpp::internal::basic_cast<13>(SEXPREC*) /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/r_cast.h:66:24
    #6 0x7bf620756441 in SEXPREC* Rcpp::internal::r_true_cast<13>(SEXPREC*) /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/r_cast.h:86:20
    #7 0x7bf620756441 in SEXPREC* Rcpp::r_cast<13>(SEXPREC*) /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/r_cast.h:170:20
    #8 0x7bf620756441 in Rcpp::Vector<13, Rcpp::PreserveStorage>::Vector(SEXPREC*) /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/vector/Vector.h:74:25
    #9 0x7bf62075554b in Rcpp::traits::Exporter<arma::Cube<int>>::Exporter(SEXPREC*) /data/localhost/ripley/R/test-clang/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloAs.h:465:28
    #10 0x7bf62075554b in arma::Cube<int> Rcpp::internal::as<arma::Cube<int>>(SEXPREC*, Rcpp::traits::r_type_generic_tag) /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/as.h:86:41
    #11 0x7bf62074365b in arma::Cube<int> Rcpp::as<arma::Cube<int>>(SEXPREC*) /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/as.h:151:16
    #12 0x7bf62074365b in Rcpp::ConstReferenceInputParameter<arma::Cube<int>>::ConstReferenceInputParameter(SEXPREC*) /data/localhost/ripley/R/test-clang/Rcpp/include/Rcpp/InputParameter.h:72:54
    #13 0x7bf62074365b in _nethist_multinethist_fastgreedy /data/localhost/ripley/R/packages/tests-clang-ASAN/nethist/src/RcppExports.cpp:32:63
    #14 0x5614d9aa509e in R_doDotCall /data/localhost/ripley/R/svn/R-devel/src/main/dotcode.c
    #15 0x5614d9b69a8a in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8704:21
    #16 0x5614d9b51af4 in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #17 0x5614d9b50081 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #18 0x5614d9b9881c in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #19 0x5614d9b979d8 in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #20 0x5614d9b5313e in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #21 0x5614d9c5f144 in dispatchMethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:473:16
    #22 0x5614d9c5dc54 in Rf_usemethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:513:10
    #23 0x5614d9c603a4 in do_usemethod /data/localhost/ripley/R/svn/R-devel/src/main/objects.c:579:9
    #24 0x5614d9b63cf3 in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:8170:15
    #25 0x5614d9b51af4 in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #26 0x5614d9b50081 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #27 0x5614d9b9881c in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #28 0x5614d9b979d8 in applyClosure_core /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #29 0x5614d9b5313e in Rf_applyClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #30 0x5614d9b50aa8 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #31 0x5614d9b5238a in forcePromise /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:976:13
    #32 0x5614d9b7cf1d in getvar /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:5867:6
    #33 0x5614d9b7cf1d in bcEval_loop /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7880:20
    #34 0x5614d9b51af4 in bcEval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #35 0x5614d9b50081 in Rf_eval /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #36 0x5614d9b9881c in R_execClosure /data/localhost/ripley/R/svn/R-devel/src/main/eval.c:2398:39

SUMMARY: AddressSanitizer: heap-use-after-free /data/localhost/ripley/R/packages/tests-clang-ASAN/nethist/src/Assignment.cpp:121:12 in Assignment::update_thetahat(arma::Col<unsigned int> const&, arma::Cube<int> const&)
Shadow bytes around the buggy address:
  0x7eb62f9c9400: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7eb62f9c9480: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7eb62f9c9500: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7eb62f9c9580: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7eb62f9c9600: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
=>0x7eb62f9c9680: fd fd fd fd fd fd fd fd fd fd[fd]fd fd fd fd fd
  0x7eb62f9c9700: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7eb62f9c9780: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7eb62f9c9800: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7eb62f9c9880: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7eb62f9c9900: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
Shadow byte legend (one shadow byte represents 8 application bytes):
  Addressable:           00
  Partially addressable: 01 02 03 04 05 06 07 
  Heap left redzone:       fa
  Freed heap region:       fd
  Stack left redzone:      f1
  Stack mid redzone:       f2
  Stack right redzone:     f3
  Stack after return:      f5
  Stack use after scope:   f8
  Global redzone:          f9
  Global init order:       f6
  Poisoned by user:        f7
  Container overflow:      fc
  Array cookie:            ac
  Intra object redzone:    bb
  ASan internal:           fe
  Left alloca redzone:     ca
  Right alloca redzone:    cb
==3748292==ABORTING