R Under development (unstable) (2026-07-04 r90207) -- "Unsuffered Consequences"
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> ## require(agridat)
> ## dat <- gotway.hessianfly
> 
> if (.Platform$OS.type != "windows") {
+ ## don't actually use gotway_hessianfly_fit or gotway_hessianfly_prof,
+ ## so we should be OK even with R< 3.0.1
+ load(system.file("testdata","gotway_hessianfly.rda",package="lme4"))
+ # Block random.  See Glimmix manual, output 1.18.
+ # Note: (Different parameterization)
+ 
+ ## require("lme4.0")
+ ## fit2 <- glmer(cbind(y, n-y) ~ gen + (1|block), data=dat, family=binomial)
+ ## params <- list(fixef=fixef(fit2),theta=getME(fit2,"theta"))
+ ## detach("package:lme4.0")
+ lme4.0fit <- structure(list(fixef = structure(c(1.50345713031203, -0.193853259383803, 
+ -0.540808391060274, -1.43419379979154, -0.203701042949808, -0.978322555343941, 
+ -0.604078624475678, -1.67742449813309, -1.39842466673692, -0.681709344788684, 
+ -1.46295367186169, -1.45908310198959, -3.55285756517073, -2.50731975980307, 
+ -2.08716296677356, -2.96974270029992), .Names = c("(Intercept)", 
+ "genG02", "genG03", "genG04", "genG05", "genG06", "genG07", "genG08", 
+ "genG09", "genG10", "genG11", "genG12", "genG13", "genG14", "genG15", 
+ "genG16")), theta = structure(0.0319087494293615, .Names = "block.(Intercept)")), .Names = c("fixef", 
+ "theta"))
+ 
+ ## start doesn't work because we don't get there
+ library(lme4)
+ m1 <- glmer(cbind(y, n-y) ~ gen + (1|block), data=gotway.hessianfly,
+             family=binomial)
+ m1B <- update(m1,control=glmerControl(optimizer="bobyqa"))
+ max(abs(m1@optinfo$derivs$gradient))  ## 0.0012
+ max(abs(m1B@optinfo$derivs$gradient)) ## 2.03e-5
+ abs(m1@optinfo$derivs$gradient)/abs(m1B@optinfo$derivs$gradient)
+ ## bobyqa gets gradients *at least* 1.64* lower
+ 
+ lme4fit <- list(fixef=fixef(m1),theta=getME(m1,"theta"))
+ 
+ ## hack around slight naming differences
+ lme4fit$theta <- unname(lme4fit$theta)
+ lme4.0fit$theta <- unname(lme4.0fit$theta)
+ ## difference in theta on x86_64-w64-mingw32 (64-bit) with r-devel is  0.000469576
+ stopifnot(all.equal(lme4fit, lme4.0fit, tolerance = 5e-4))
+ 
+ ## Fun stuff: visualize and alternative model
+ 
+ ## library(ggplot2)
+ ## dat$prop <- dat$y/dat$n
+ ## theme_set(theme_bw())
+ ## ggplot(dat,aes(x=gen,y=prop,colour=block))+geom_point(aes(size=n))+
+ ##     geom_line(aes(group=block,colour=block))+
+ ##     geom_smooth(family=binomial,aes(weight=n,colour=block,group=block),method="glm",
+ ##                 alpha=0.1)
+ 
+ ## dat$obs <- factor(seq(nrow(dat)))
+ ## m2 <- glmer(cbind(y, n-y) ~ block+ (1|gen) + (1|obs), data=dat, family=binomial)
+ 
+ }  ## not on windows/CRAN
Loading required package: Matrix
=================================================================
==474479==ERROR: AddressSanitizer: heap-use-after-free on address 0x7daeae2c0930 at pc 0x7b5e8c8ce93c bp 0x7ffc2a6842b0 sp 0x7ffc2a6842a8
READ of size 16 at 0x7daeae2c0930 thread T0
    #0 0x7b5e8c8ce93b in Eigen::internal::product_evaluator<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>, 8, Eigen::DiagonalShape, Eigen::DenseShape, double, double>::coeff(long, long) const /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:925:46
    #1 0x7b5e8c8ce93b in Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>>, Eigen::internal::evaluator<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>, Eigen::internal::assign_op<double, double>, 0>::assignCoeff(long, long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:58
    #2 0x7b5e8c8ce93b in Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>>, Eigen::internal::evaluator<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>, Eigen::internal::assign_op<double, double>, 0>::assignCoeffByOuterInner(long, long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:668:5
    #3 0x7b5e8c8ce93b in Eigen::internal::dense_assignment_loop<Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>>, Eigen::internal::evaluator<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>, Eigen::internal::assign_op<double, double>, 0>, 0, 0>::run(Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>>, Eigen::internal::evaluator<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>, Eigen::internal::assign_op<double, double>, 0>&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:347:16
    #4 0x7b5e8c8ce93b in void Eigen::internal::call_dense_assignment_loop<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>, Eigen::internal::assign_op<double, double>>(Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>&, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1> const&, Eigen::internal::assign_op<double, double> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785:3
    #5 0x7b5e8c8ce93b in Eigen::internal::Assignment<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>, Eigen::internal::assign_op<double, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>&, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1> const&, Eigen::internal::assign_op<double, double> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:5
    #6 0x7b5e8c8ce93b in void Eigen::internal::call_assignment_no_alias<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>, Eigen::internal::assign_op<double, double>>(Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>&, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1> const&, Eigen::internal::assign_op<double, double> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:3
    #7 0x7b5e8c8ce93b in void Eigen::internal::call_assignment<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>, Eigen::internal::assign_op<double, double>>(Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>&, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1> const&, Eigen::internal::assign_op<double, double> const&, Eigen::internal::enable_if<!evaluator_assume_aliasing<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>::value, void*>::type) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:3
    #8 0x7b5e8c8ce93b in void Eigen::internal::call_assignment<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>(Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>&, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:3
    #9 0x7b5e8c8ce93b in Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>& Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>>::operator=<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>(Eigen::DenseBase<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Assign.h:66:3
    #10 0x7b5e8c8ce93b in Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>& Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>::operator=<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>(Eigen::DenseBase<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Map.h:162:5
    #11 0x7b5e8c8ce93b in lme4::merPredD::updateXwts(Eigen::Array<double, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/packages/tests-clang-ASAN/lme4/src/predModule.cpp:221:30
    #12 0x7b5e8c85ccd2 in internal_glmerWrkIter(lme4::merPredD*, lme4::glmResp*, bool) /data/gannet/ripley/R/packages/tests-clang-ASAN/lme4/src/external.cpp:274:13
    #13 0x7b5e8c85ccd2 in pwrssUpdate(lme4::glmResp*, lme4::merPredD*, bool, double, int, int) /data/gannet/ripley/R/packages/tests-clang-ASAN/lme4/src/external.cpp:330:20
    #14 0x7b5e8c85bbc8 in glmerLaplace /data/gannet/ripley/R/packages/tests-clang-ASAN/lme4/src/external.cpp:386:9
    #15 0x564b89f71b06 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:770:11
    #16 0x564b8a035d2d in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8700:21
    #17 0x564b8a01dd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #18 0x564b8a01c301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #19 0x564b8a064a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #20 0x564b8a063c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #21 0x564b8a01f3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #22 0x564b8a01cd28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #23 0x564b8a075bc5 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3585:8
    #24 0x564b8a01c840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #25 0x564b8a073269 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001:10
    #26 0x564b8a01c840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #27 0x564b8a064a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #28 0x564b8a063c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #29 0x564b8a03deba in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #30 0x564b8a03deba in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8121:16
    #31 0x564b8a01dd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #32 0x564b8a01c301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #33 0x564b8a01e60a in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976:13
    #34 0x564b8a01c4f5 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185:6
    #35 0x564b8a01e9a2 in Rf_evalList /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3683:12
    #36 0x564b8a01c9d1 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1249:20
    #37 0x564b8a075bc5 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3585:8
    #38 0x564b8a01c840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #39 0x564b8a01e9a2 in Rf_evalList /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3683:12
    #40 0x564b8a01c9d1 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1249:20
    #41 0x564b8a01e9a2 in Rf_evalList /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3683:12
    #42 0x564b8a01c9d1 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1249:20
    #43 0x564b8a01e60a in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976:13
    #44 0x564b8a01c2b7 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1191:2
    #45 0x564b8a02a77a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14
    #46 0x564b8a01dd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #47 0x564b8a01c301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #48 0x564b8a064a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #49 0x564b8a063c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #50 0x564b8a01f3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #51 0x564b8a01cd28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #52 0x564b8a073269 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001:10
    #53 0x564b8a01c840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #54 0x564b8a064a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #55 0x564b8a063c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #56 0x564b8a03deba in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #57 0x564b8a03deba in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8121:16
    #58 0x564b8a01dd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #59 0x564b8a01c301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #60 0x564b8a064a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #61 0x564b8a063c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #62 0x564b8a01f3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #63 0x564b8a01cd28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #64 0x564b89ed2abc in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2788:12
    #65 0x564b8a02a77a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14
    #66 0x564b8a01dd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #67 0x564b8a01c301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #68 0x564b8a064a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #69 0x564b8a063c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #70 0x564b8a01f3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #71 0x564b8a01cd28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #72 0x564b8a075bc5 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3585:8
    #73 0x564b8a01c840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #74 0x564b8a073269 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001:10
    #75 0x564b8a01c840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #76 0x564b8a01c840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #77 0x564b8a0edbe1 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:23
    #78 0x564b8a0f0410 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317:11
    #79 0x564b8a0f0410 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235:5
    #80 0x564b8a0f04a2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242:5
    #81 0x564b89df1d3c in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5
    #82 0x7f5ea3f11574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1)
    #83 0x7f5ea3f11627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1)
    #84 0x564b89d097d4 in _start (/data/gannet/ripley/R/clang-ASAN/bin/exec/R+0x17d4)

0x7daeae2c0930 is located 48 bytes inside of 8240-byte region [0x7daeae2c0900,0x7daeae2c2930)
freed by thread T0 here:
    #0 0x564b89dae916 in free /home/runner/work/llvm-project/llvm-project/compiler-rt/lib/asan/asan_malloc_linux.cpp:51:3
    #1 0x564b8a10b31b in ReleaseLargeFreeVectors /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:1167:7
    #2 0x564b8a10b31b in RunGenCollect /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:1951:5
    #3 0x564b8a0fe18b in R_gc_internal /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:3237:19
    #4 0x564b8a113fc5 in CONS_NR /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:2519:2
    #5 0x564b8a0f522a in Rf_matchArgs_NR /data/gannet/ripley/R/svn/R-devel/src/main/match.c:196:12
    #6 0x564b8a0f6c58 in Rf_matchArgs_RC /data/gannet/ripley/R/svn/R-devel/src/main/match.c:392:17
    #7 0x564b8a063fa6 in make_applyClosure_env /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2261:15
    #8 0x564b8a063b25 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2304:19
    #9 0x564b8a01f3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #10 0x564b8a01cd28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #11 0x564b8a01c840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #12 0x564b8a073269 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001:10
    #13 0x564b8a01c840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #14 0x564b8a064a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #15 0x564b8a06e60a in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2567:11
    #16 0x7f5ea0f0ff40 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154:19
    #17 0x564b8a133853 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1348:13
    #18 0x564b8a038a1f in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8085:12
    #19 0x564b8a01dd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #20 0x564b8a01c301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #21 0x564b8a064a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #22 0x564b8a063c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #23 0x564b8a01f3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #24 0x564b8a134e97 in R_possible_dispatch /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1687:10
    #25 0x564b8a07cd49 in Rf_DispatchOrEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4191:14
    #26 0x564b8a250a0a in R_DispatchOrEvalSP /data/gannet/ripley/R/svn/R-devel/src/main/subset.c:671:16
    #27 0x564b8a25db2f in do_subset3 /data/gannet/ripley/R/svn/R-devel/src/main/subset.c:1264:8
    #28 0x564b8a01c840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #29 0x564b8a01c541 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1219:19
    #30 0x564b8a073269 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001:10

previously allocated by thread T0 here:
    #0 0x564b89daebb4 in malloc /home/runner/work/llvm-project/llvm-project/compiler-rt/lib/asan/asan_malloc_linux.cpp:67:3
    #1 0x564b8a0f8c7c in Rf_allocVector3 /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:2894:7
    #2 0x564b89e5132b in Rf_allocVector /data/gannet/ripley/R/svn/R-devel/src/include/Rinlinedfuns.h:609:12
    #3 0x564b89e5132b in Rf_allocMatrix /data/gannet/ripley/R/svn/R-devel/src/main/array.c:236:17
    #4 0x7b5e9349c0ce in modelmatrix /data/gannet/ripley/R/svn/R-devel/src/library/stats/src/model.c:676:17
    #5 0x564b89f66365 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:573:11
    #6 0x564b8a02a77a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14
    #7 0x564b8a01dd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #8 0x564b8a01c301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #9 0x564b8a064a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #10 0x564b8a063c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #11 0x564b8a01f3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #12 0x564b8a12ae14 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473:16
    #13 0x564b8a129a98 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:523:9
    #14 0x564b8a12c073 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579:9
    #15 0x564b8a02ff93 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8170:15
    #16 0x564b8a01dd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #17 0x564b8a01c301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #18 0x564b8a064a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #19 0x564b8a063c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #20 0x564b8a01f3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #21 0x564b8a01cd28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #22 0x564b8a07a653 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3975:13
    #23 0x564b8a02a77a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14
    #24 0x564b8a01dd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #25 0x564b8a01c301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #26 0x564b8a064a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #27 0x564b8a063c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #28 0x564b8a01f3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #29 0x564b8a01cd28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #30 0x564b8a075bc5 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3585:8

SUMMARY: AddressSanitizer: heap-use-after-free /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:925:46 in Eigen::internal::product_evaluator<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>, 8, Eigen::DiagonalShape, Eigen::DenseShape, double, double>::coeff(long, long) const
Shadow bytes around the buggy address:
  0x7daeae2c0680: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7daeae2c0700: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7daeae2c0780: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7daeae2c0800: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7daeae2c0880: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
=>0x7daeae2c0900: fd fd fd fd fd fd[fd]fd fd fd fd fd fd fd fd fd
  0x7daeae2c0980: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7daeae2c0a00: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7daeae2c0a80: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7daeae2c0b00: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7daeae2c0b80: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
Shadow byte legend (one shadow byte represents 8 application bytes):
  Addressable:           00
  Partially addressable: 01 02 03 04 05 06 07 
  Heap left redzone:       fa
  Freed heap region:       fd
  Stack left redzone:      f1
  Stack mid redzone:       f2
  Stack right redzone:     f3
  Stack after return:      f5
  Stack use after scope:   f8
  Global redzone:          f9
  Global init order:       f6
  Poisoned by user:        f7
  Container overflow:      fc
  Array cookie:            ac
  Intra object redzone:    bb
  ASan internal:           fe
  Left alloca redzone:     ca
  Right alloca redzone:    cb
==474479==ABORTING