--- re-building ‘autoscale.Rmd’ using rmarkdown
--- finished re-building ‘autoscale.Rmd’

--- re-building ‘covariance_structures.Rmd’ using rmarkdown
=================================================================
==653434==ERROR: AddressSanitizer: heap-use-after-free on address 0x7d6a90a1d530 at pc 0x7b3a7b0b193c bp 0x7ffe7268f6d0 sp 0x7ffe7268f6c8
READ of size 16 at 0x7d6a90a1d530 thread T0
    #0 0x7b3a7b0b193b in Eigen::internal::product_evaluator<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>, 8, Eigen::DiagonalShape, Eigen::DenseShape, double, double>::coeff(long, long) const /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:925:46
    #1 0x7b3a7b0b193b in Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>>, Eigen::internal::evaluator<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>, Eigen::internal::assign_op<double, double>, 0>::assignCoeff(long, long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:654:58
    #2 0x7b3a7b0b193b in Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>>, Eigen::internal::evaluator<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>, Eigen::internal::assign_op<double, double>, 0>::assignCoeffByOuterInner(long, long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:668:5
    #3 0x7b3a7b0b193b in Eigen::internal::dense_assignment_loop<Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>>, Eigen::internal::evaluator<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>, Eigen::internal::assign_op<double, double>, 0>, 0, 0>::run(Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>>, Eigen::internal::evaluator<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>, Eigen::internal::assign_op<double, double>, 0>&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:347:16
    #4 0x7b3a7b0b193b in void Eigen::internal::call_dense_assignment_loop<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>, Eigen::internal::assign_op<double, double>>(Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>&, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1> const&, Eigen::internal::assign_op<double, double> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785:3
    #5 0x7b3a7b0b193b in Eigen::internal::Assignment<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>, Eigen::internal::assign_op<double, double>, Eigen::internal::Dense2Dense, void>::run(Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>&, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1> const&, Eigen::internal::assign_op<double, double> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:5
    #6 0x7b3a7b0b193b in void Eigen::internal::call_assignment_no_alias<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>, Eigen::internal::assign_op<double, double>>(Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>&, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1> const&, Eigen::internal::assign_op<double, double> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:3
    #7 0x7b3a7b0b193b in void Eigen::internal::call_assignment<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>, Eigen::internal::assign_op<double, double>>(Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>&, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1> const&, Eigen::internal::assign_op<double, double> const&, Eigen::internal::enable_if<!evaluator_assume_aliasing<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>::value, void*>::type) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:3
    #8 0x7b3a7b0b193b in void Eigen::internal::call_assignment<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>(Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>&, Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:3
    #9 0x7b3a7b0b193b in Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>& Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>>::operator=<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>(Eigen::DenseBase<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Assign.h:66:3
    #10 0x7b3a7b0b193b in Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>& Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>::operator=<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>>(Eigen::DenseBase<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Map.h:162:5
    #11 0x7b3a7b0b193b in lme4::merPredD::updateXwts(Eigen::Array<double, -1, 1, 0, -1, 1> const&) /data/gannet/ripley/R/packages/tests-clang-ASAN/lme4/src/predModule.cpp:221:30
    #12 0x7b3a7b03fcd2 in internal_glmerWrkIter(lme4::merPredD*, lme4::glmResp*, bool) /data/gannet/ripley/R/packages/tests-clang-ASAN/lme4/src/external.cpp:274:13
    #13 0x7b3a7b03fcd2 in pwrssUpdate(lme4::glmResp*, lme4::merPredD*, bool, double, int, int) /data/gannet/ripley/R/packages/tests-clang-ASAN/lme4/src/external.cpp:330:20
    #14 0x7b3a7b03ebc8 in glmerLaplace /data/gannet/ripley/R/packages/tests-clang-ASAN/lme4/src/external.cpp:386:9
    #15 0x56086df5fb06 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:770:11
    #16 0x56086e023d2d in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8700:21
    #17 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #18 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #19 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #20 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #21 0x56086e00d3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #22 0x56086e00ad28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #23 0x56086e063bc5 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3585:8
    #24 0x56086e00a840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #25 0x56086e061269 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001:10
    #26 0x56086e00a840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #27 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #28 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #29 0x56086e02beba in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #30 0x56086e02beba in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8121:16
    #31 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #32 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #33 0x56086e00c60a in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976:13
    #34 0x56086e00a4f5 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185:6
    #35 0x56086e00c9a2 in Rf_evalList /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3683:12
    #36 0x56086e00a9d1 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1249:20
    #37 0x56086e063bc5 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3585:8
    #38 0x56086e00a840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #39 0x56086e00c9a2 in Rf_evalList /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3683:12
    #40 0x56086e00a9d1 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1249:20
    #41 0x56086e00c9a2 in Rf_evalList /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3683:12
    #42 0x56086e00a9d1 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1249:20
    #43 0x56086e00c60a in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976:13
    #44 0x56086e00a2b7 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1191:2
    #45 0x56086e01877a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14
    #46 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #47 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #48 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #49 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #50 0x56086e00d3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #51 0x56086e00ad28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #52 0x56086e061269 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001:10
    #53 0x56086e00a840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #54 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #55 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #56 0x56086e02beba in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #57 0x56086e02beba in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8121:16
    #58 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #59 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #60 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #61 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #62 0x56086e00d3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #63 0x56086e00ad28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #64 0x56086dec0abc in do_docall /data/gannet/ripley/R/svn/R-devel/src/main/coerce.c:2788:12
    #65 0x56086e01877a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14
    #66 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #67 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #68 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #69 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #70 0x56086e00d3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #71 0x56086e00ad28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #72 0x56086e063bc5 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3585:8
    #73 0x56086e00a840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #74 0x56086e068653 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3975:13
    #75 0x56086e01877a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14
    #76 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #77 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #78 0x56086e00c60a in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976:13
    #79 0x56086e00a4f5 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185:6
    #80 0x56086e069883 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4018:9
    #81 0x56086e1124b9 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1424:11
    #82 0x56086e01df93 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8170:15
    #83 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #84 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #85 0x56086e00c60a in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976:13
    #86 0x56086e00a4f5 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1185:6
    #87 0x56086e00c60a in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:976:13
    #88 0x56086e0371b1 in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5867:6
    #89 0x56086e0371b1 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7880:20
    #90 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #91 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #92 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #93 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #94 0x56086e00d3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #95 0x56086e00ad28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #96 0x56086e068653 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3975:13
    #97 0x56086e01877a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14
    #98 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #99 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #100 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #101 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #102 0x56086e00d3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #103 0x56086e00ad28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #104 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #105 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #106 0x56086e02beba in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #107 0x56086e02beba in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8121:16
    #108 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #109 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #110 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #111 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #112 0x56086e00d3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #113 0x56086e00ad28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #114 0x56086e0dbbe1 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:23
    #115 0x56086e0de410 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317:11
    #116 0x56086e0de410 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235:5
    #117 0x56086e0de4a2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242:5
    #118 0x56086dddfd3c in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5
    #119 0x7f3a94111574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1)
    #120 0x7f3a94111627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1)
    #121 0x56086dcf77d4 in _start (/data/gannet/ripley/R/clang-ASAN/bin/exec/R+0x17d4)

0x7d6a90a1d530 is located 48 bytes inside of 6448-byte region [0x7d6a90a1d500,0x7d6a90a1ee30)
freed by thread T0 here:
    #0 0x56086dd9c916 in free /home/runner/work/llvm-project/llvm-project/compiler-rt/lib/asan/asan_malloc_linux.cpp:51:3
    #1 0x56086e0f931b in ReleaseLargeFreeVectors /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:1167:7
    #2 0x56086e0f931b in RunGenCollect /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:1951:5
    #3 0x56086e0ec18b in R_gc_internal /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:3237:19
    #4 0x56086e101fc5 in CONS_NR /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:2519:2
    #5 0x56086e0e322a in Rf_matchArgs_NR /data/gannet/ripley/R/svn/R-devel/src/main/match.c:196:12
    #6 0x56086e0e4c58 in Rf_matchArgs_RC /data/gannet/ripley/R/svn/R-devel/src/main/match.c:392:17
    #7 0x56086e051fa6 in make_applyClosure_env /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2261:15
    #8 0x56086e051b25 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2304:19
    #9 0x56086e00d3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #10 0x56086e00ad28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #11 0x56086e05c9cb in do_if /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2709:20
    #12 0x56086e00a840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #13 0x56086e061269 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001:10
    #14 0x56086e00a840 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12
    #15 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #16 0x56086e05c60a in R_execMethod /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2567:11
    #17 0x7f3a911eff40 in R_dispatchGeneric /data/gannet/ripley/R/svn/R-devel/src/library/methods/src/methods_list_dispatch.c:1154:19
    #18 0x56086e121853 in do_standardGeneric /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1348:13
    #19 0x56086e026a1f in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8085:12
    #20 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #21 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #22 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #23 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #24 0x56086e00d3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #25 0x56086e122e97 in R_possible_dispatch /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:1687:10
    #26 0x56086e04aa0f in tryDispatch /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6090:16
    #27 0x56086e0181c2 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8320:19
    #28 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #29 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #30 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39

previously allocated by thread T0 here:
    #0 0x56086dd9cbb4 in malloc /home/runner/work/llvm-project/llvm-project/compiler-rt/lib/asan/asan_malloc_linux.cpp:67:3
    #1 0x56086e0e6c7c in Rf_allocVector3 /data/gannet/ripley/R/svn/R-devel/src/main/memory.c:2894:7
    #2 0x56086de3f32b in Rf_allocVector /data/gannet/ripley/R/svn/R-devel/src/include/Rinlinedfuns.h:609:12
    #3 0x56086de3f32b in Rf_allocMatrix /data/gannet/ripley/R/svn/R-devel/src/main/array.c:236:17
    #4 0x7b3a878060ce in modelmatrix /data/gannet/ripley/R/svn/R-devel/src/library/stats/src/model.c:676:17
    #5 0x56086df54365 in do_External /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:573:11
    #6 0x56086e01877a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14
    #7 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #8 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #9 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #10 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #11 0x56086e00d3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #12 0x56086e118e14 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473:16
    #13 0x56086e117a98 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:523:9
    #14 0x56086e11a073 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579:9
    #15 0x56086e01df93 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8170:15
    #16 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #17 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #18 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #19 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #20 0x56086e00d3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #21 0x56086e00ad28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #22 0x56086e068653 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3975:13
    #23 0x56086e01877a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14
    #24 0x56086e00bd74 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16
    #25 0x56086e00a301 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #26 0x56086e052a9c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39
    #27 0x56086e051c58 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16
    #28 0x56086e00d3be in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16
    #29 0x56086e00ad28 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12
    #30 0x56086e063bc5 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3585:8

SUMMARY: AddressSanitizer: heap-use-after-free /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:925:46 in Eigen::internal::product_evaluator<Eigen::Product<Eigen::DiagonalWrapper<Eigen::Map<Eigen::Matrix<double, -1, 1, 0, -1, 1>, 0, Eigen::Stride<0, 0>> const>, Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, 1>, 8, Eigen::DiagonalShape, Eigen::DenseShape, double, double>::coeff(long, long) const
Shadow bytes around the buggy address:
  0x7d6a90a1d280: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7d6a90a1d300: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7d6a90a1d380: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7d6a90a1d400: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7d6a90a1d480: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
=>0x7d6a90a1d500: fd fd fd fd fd fd[fd]fd fd fd fd fd fd fd fd fd
  0x7d6a90a1d580: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7d6a90a1d600: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7d6a90a1d680: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7d6a90a1d700: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
  0x7d6a90a1d780: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
Shadow byte legend (one shadow byte represents 8 application bytes):
  Addressable:           00
  Partially addressable: 01 02 03 04 05 06 07 
  Heap left redzone:       fa
  Freed heap region:       fd
  Stack left redzone:      f1
  Stack mid redzone:       f2
  Stack right redzone:     f3
  Stack after return:      f5
  Stack use after scope:   f8
  Global redzone:          f9
  Global init order:       f6
  Poisoned by user:        f7
  Container overflow:      fc
  Array cookie:            ac
  Intra object redzone:    bb
  ASan internal:           fe
  Left alloca redzone:     ca
  Right alloca redzone:    cb
==653434==ABORTING
--- re-building ‘lmerperf.Rmd’ using rmarkdown
--- finished re-building ‘lmerperf.Rmd’

--- re-building ‘Theory.Rnw’ using knitr
--- finished re-building ‘Theory.Rnw’

--- re-building ‘lmer.Rnw’ using knitr
--- finished re-building ‘lmer.Rnw’

--- re-building ‘PLSvGLS.Rnw’ using Sweave
--- finished re-building ‘PLSvGLS.Rnw’

SUMMARY: processing the following file failed:
  ‘covariance_structures.Rmd’

Error: Vignette re-building failed.
Execution halted