* using log directory ‘/data/gannet/ripley/R/packages/tests-clang-ASAN/graphpcor.Rcheck’
* using R Under development (unstable) (2026-01-14 r89303)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 21.1.8
    flang version 21.1.8
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘graphpcor/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graphpcor’ version ‘0.1.15’
* package encoding: UTF-8
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package ‘graphpcor’ can be installed ... [65s/76s] OK
* used C compiler: ‘clang version 21.1.8’
* checking package directory ... OK
* checking whether the package can be loaded ... [12s/12s] OK
* checking whether the package can be loaded with stated dependencies ... [13s/14s] OK
* checking whether the package can be unloaded cleanly ... [13s/13s] OK
* checking whether the namespace can be loaded with stated dependencies ... [11s/11s] OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... [11s/11s] OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/11s] ERROR
Running examples in ‘graphpcor-Ex.R’ failed
The error most likely occurred in:

> ### Name: cgeneric_LKJ
> ### Title: Build an 'cgeneric' model for the LKG prior on correlation
> ###   matrix.
> ### Aliases: cgeneric_LKJ
> 
> ### ** Examples
> 
> ## a cgeneric model for the LKJ prior
> ## for theta from the CPC parametrization
> cglkj <- cgeneric(
+     model = "LKJ", n = 3, eta = 2,
+     useINLAprecomp = FALSE)##!is.na(packageCheck("INLA", "25.12.16")))
> 
> ## correlation matrix, p = 3
> cc <- matrix(c(1,.8,-.625, 0.8,1,-.5, -0.625,-.5,1), 3)
> 
> ## CPC parametrization: C(theta)
> (bb <- basecor(cc))
Parameters (CPC parametrization):
[1]  1.0986131 -0.7331689  0.0000000
Base correlation matrix:
       [,1] [,2]   [,3]
[1,]  1.000  0.8 -0.625
[2,]  0.800  1.0 -0.500
[3,] -0.625 -0.5  1.000
> th <- bb$theta
> 
> ## p(theta | eta)
> prior(cglkj, theta = th)
=================================================================
==1541250==ERROR: AddressSanitizer: dynamic-stack-buffer-overflow on address 0x7ffd61fecd90 at pc 0x7b614fcca256 bp 0x7ffd61fecd50 sp 0x7ffd61fecd48
WRITE of size 8 at 0x7ffd61fecd90 thread T0
    #0 0x7b614fcca255 in cpcCholesky /data/gannet/ripley/R/packages/tests-clang-ASAN/graphpcor/src/graphpcor_utils.c:116:10
    #1 0x7b614fcc0814 in inla_cgeneric_LKJ /data/gannet/ripley/R/packages/tests-clang-ASAN/graphpcor/src/cgeneric_LKJ.c:193:3
    #2 0x7f6168d019ae in inla_cgeneric_element_get (/data/gannet/ripley/R/test-clang/INLAtools/libs/INLAtools.so+0x19ae)
    #3 0x55bda1de0c1e in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c
    #4 0x55bda1de959c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437:11
    #5 0x55bda1e943c9 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8132:14
    #6 0x55bda1e87084 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515:16
    #7 0x55bda1e855aa in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #8 0x55bda1ecd53c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389:22
    #9 0x55bda1ecc701 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302:16
    #10 0x55bda1e88f38 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324:16
    #11 0x55bda1f97744 in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:473:16
    #12 0x55bda1f96254 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:513:10
    #13 0x55bda1f989a3 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:579:9
    #14 0x55bda1e99bc3 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8152:15
    #15 0x55bda1e87084 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7515:16
    #16 0x55bda1e855aa in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #17 0x55bda1ecd53c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2389:22
    #18 0x55bda1ecc701 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2302:16
    #19 0x55bda1e85ff9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2324:16
    #20 0x55bda1e85ff9 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280:12
    #21 0x55bda1f5a101 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:15
    #22 0x55bda1f5c950 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317:11
    #23 0x55bda1f5c950 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235:5
    #24 0x55bda1f5c9e2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242:5
    #25 0x55bda1c6213c in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5
    #26 0x7f616c0115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #27 0x7f616c0116a7 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #28 0x55bda1b7a7e4 in _start (/data/gannet/ripley/R/clang-ASAN/bin/exec/R+0x17e4)

Address 0x7ffd61fecd90 is located in stack of thread T0
SUMMARY: AddressSanitizer: dynamic-stack-buffer-overflow /data/gannet/ripley/R/packages/tests-clang-ASAN/graphpcor/src/graphpcor_utils.c:116:10 in cpcCholesky
Shadow bytes around the buggy address:
  0x7ffd61fecb00: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7ffd61fecb80: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7ffd61fecc00: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7ffd61fecc80: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7ffd61fecd00: 00 00 00 00 00 00 00 00 00 00 00 00 ca ca ca ca
=>0x7ffd61fecd80: 00 00[cb]cb cb cb cb cb ca ca ca ca 00 00 00 00
  0x7ffd61fece00: 00 00 cb cb cb cb cb cb 00 00 00 00 00 00 00 00
  0x7ffd61fece80: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7ffd61fecf00: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7ffd61fecf80: ca ca ca ca 00 00 00 00 00 00 cb cb cb cb cb cb
  0x7ffd61fed000: ca ca ca ca 00 00 00 cb cb cb cb cb ca ca ca ca
Shadow byte legend (one shadow byte represents 8 application bytes):
  Addressable:           00
  Partially addressable: 01 02 03 04 05 06 07 
  Heap left redzone:       fa
  Freed heap region:       fd
  Stack left redzone:      f1
  Stack mid redzone:       f2
  Stack right redzone:     f3
  Stack after return:      f5
  Stack use after scope:   f8
  Global redzone:          f9
  Global init order:       f6
  Poisoned by user:        f7
  Container overflow:      fc
  Array cookie:            ac
  Intra object redzone:    bb
  ASan internal:           fe
  Left alloca redzone:     ca
  Right alloca redzone:    cb
==1541250==ABORTING
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [41s/41s] OK
* DONE
Status: 1 ERROR