R Under development (unstable) (2026-05-11 r90046) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > > library(testthat) > library(dsem) > > # Run tests > testthat::test_check("dsem") Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 mu_j 2 Random 3 x_tj 200 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 lnsigma_j 2 Fixed 4 mu_j 2 Random 5 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random 4 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random 4 x_tj 122 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 7 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 5 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 6 Fixed 2 delta0_j 2 Fixed 3 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 4 Fixed 2 mu_j 2 Fixed Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 4 Fixed 2 mu_j 2 Fixed 3 x_tj 100 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 4 Fixed 2 mu_j 2 Fixed 3 x_tj 100 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 4 Fixed 2 mu_j 2 Fixed 3 x_tj 100 Random Read 10 records Coefficient_name Number_of_coefficients Type 1 beta_z 17 Fixed 2 mu_j 8 Random $par beta_z beta_z beta_z beta_z beta_z beta_z 0.28417790 -0.03841437 0.84012277 0.44333141 0.36664513 -0.12270679 beta_z beta_z beta_z beta_z beta_z beta_z 0.43580399 0.15036987 0.12793940 6.49358658 10.80899505 0.69515907 beta_z beta_z beta_z beta_z beta_z 4.21165242 1.34847427 2.00838610 0.92424304 10.61133205 $objective [1] 431.6122 attr(,"logarithm") [1] TRUE $convergence [1] 0 $iterations [1] 80 $evaluations function gradient 94 81 $message [1] "relative convergence (4)" Read 10 records Coefficient_name Number_of_coefficients Type 1 beta_z 17 Fixed 2 mu_j 8 Random Read 10 records Coefficient_name Number_of_coefficients Type 1 beta_z 17 Fixed 2 mu_j 8 Random Read 10 records Coefficient_name Number_of_coefficients Type 1 beta_z 17 Fixed 2 lnsigma_j 2 Fixed 3 mu_j 8 Random 4 x_tj 44 Random Read 3 items Read 10 records Coefficient_name Number_of_coefficients Type 1 beta_z 17 Fixed 2 mu_j 8 Random Read 0 records Coefficient_name Number_of_coefficients Type 1 beta_z 2 Fixed 2 mu_j 2 Random Read 2 records Coefficient_name Number_of_coefficients Type 1 beta_z 2 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 4 Fixed 2 mu_j 2 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 lnsigma_j 2 Fixed 2 mu_j 2 Random 3 x_tj 122 Random Read 16 records Coefficient_name Number_of_coefficients Type 1 beta_z 24 Fixed 2 mu_j 8 Fixed 3 x_tj 232 Random Read 4 records Coefficient_name Number_of_coefficients Type 1 beta_z 5 Fixed 2 mu_j 4 Random Read 14 items Read 16 records Coefficient_name Number_of_coefficients Type 1 beta_z 24 Fixed 2 mu_j 8 Fixed 3 x_tj 232 Random ================================================================= ==1998427==ERROR: AddressSanitizer: heap-buffer-overflow on address 0x7d9892b3b170 at pc 0x7bc8788f4a16 bp 0x7ffd3f784510 sp 0x7ffd3f784508 READ of size 4 at 0x7d9892b3b170 thread T0 #0 0x7bc8788f4a15 in objective_function::operator()() /data/gannet/ripley/R/packages/tests-clang-ASAN/dsem/src/dsem.cpp:453:13 #1 0x7bc8782e5b91 in getParameterOrder /data/gannet/ripley/R/test-clang/TMB/include/tmb_core.hpp:2065:7 #2 0x5647ad761f76 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:763:11 #3 0x5647ad76f785 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437:11 #4 0x5647ad81f62a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14 #5 0x5647ad812c24 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16 #6 0x5647ad8111b1 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8 #7 0x5647ad85994c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39 #8 0x5647ad858b08 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16 #9 0x5647ad81426e in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16 #10 0x5647ad811bd8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12 #11 0x5647ad86aa75 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3585:8 #12 0x5647ad8116f0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12 #13 0x5647ad868119 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001:10 #14 0x5647ad8116f0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12 #15 0x5647ad86f503 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3975:13 #16 0x5647ad81f62a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14 #17 0x5647ad812c24 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16 #18 0x5647ad8111b1 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8 #19 0x5647ad85994c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39 #20 0x5647ad858b08 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16 #21 0x5647ad81426e in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16 #22 0x5647ad811bd8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12 #23 0x5647ad86fe6a in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3993:9 #24 0x5647ad81f62a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14 #25 0x5647ad812c24 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16 #26 0x5647ad8111b1 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8 #27 0x5647ad85994c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39 #28 0x5647ad858b08 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16 #29 0x5647ad8625f4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16 #30 0x5647ad8625f4 in R_forceAndCall /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2465:8 #31 0x5647ad619d11 in do_lapply /data/gannet/ripley/R/svn/R-devel/src/main/apply.c:75:8 #32 0x5647ad919369 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1424:11 #33 0x5647ad824e43 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8170:15 #34 0x5647ad812c24 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16 #35 0x5647ad8111b1 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8 #36 0x5647ad85994c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39 #37 0x5647ad858b08 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16 #38 0x5647ad81426e in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16 #39 0x5647ad811bd8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12 #40 0x5647ad8e2a91 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:23 #41 0x5647ad8e52c0 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317:11 #42 0x5647ad8e52c0 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235:5 #43 0x5647ad8e5352 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242:5 #44 0x5647ad5e6d3c in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5 #45 0x7fc894612574 in __libc_start_call_main (/lib64/libc.so.6+0x3574) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #46 0x7fc894612627 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x3627) (BuildId: 92b5376d35bb29c098175948cf3e7cbcae3aeae1) #47 0x5647ad4fe7d4 in _start (/data/gannet/ripley/R/clang-ASAN/bin/exec/R+0x17d4) 0x7d9892b3b170 is located 0 bytes after 2288-byte region [0x7d9892b3a880,0x7d9892b3b170) allocated by thread T0 here: #0 0x5647ad5a3bb4 in malloc /home/runner/work/llvm-project/llvm-project/compiler-rt/lib/asan/asan_malloc_linux.cpp:67:3 #1 0x7bc878512fe6 in Eigen::internal::handmade_aligned_malloc(unsigned long, unsigned long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Memory.h:105:20 #2 0x7bc878512fe6 in Eigen::internal::aligned_malloc(unsigned long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Memory.h:188:14 #3 0x7bc878512fe6 in void* Eigen::internal::conditional_aligned_malloc(unsigned long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Memory.h:241:10 #4 0x7bc878512fe6 in int* Eigen::internal::conditional_aligned_new_auto(unsigned long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/util/Memory.h:404:36 #5 0x7bc878512fe6 in Eigen::DenseStorage::resize(long, long, long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/DenseStorage.h:639:20 #6 0x7bc87877c899 in Eigen::PlainObjectBase>::resize(long, long) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:285:19 #7 0x7bc87877c899 in void Eigen::internal::resize_if_allowed, Eigen::CwiseUnaryOp, Eigen::Map, 0, Eigen::Stride<0, 0>> const>, int, int>(Eigen::Array&, Eigen::CwiseUnaryOp, Eigen::Map, 0, Eigen::Stride<0, 0>> const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:764:9 #8 0x7bc87877c899 in void Eigen::internal::call_dense_assignment_loop, Eigen::CwiseUnaryOp, Eigen::Map, 0, Eigen::Stride<0, 0>> const>, Eigen::internal::assign_op>(Eigen::Array&, Eigen::CwiseUnaryOp, Eigen::Map, 0, Eigen::Stride<0, 0>> const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:778:3 #9 0x7bc87877c899 in Eigen::internal::Assignment, Eigen::CwiseUnaryOp, Eigen::Map, 0, Eigen::Stride<0, 0>> const>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Array&, Eigen::CwiseUnaryOp, Eigen::Map, 0, Eigen::Stride<0, 0>> const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:5 #10 0x7bc87877c899 in void Eigen::internal::call_assignment_no_alias, Eigen::CwiseUnaryOp, Eigen::Map, 0, Eigen::Stride<0, 0>> const>, Eigen::internal::assign_op>(Eigen::Array&, Eigen::CwiseUnaryOp, Eigen::Map, 0, Eigen::Stride<0, 0>> const> const&, Eigen::internal::assign_op const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:3 #11 0x7bc87877c899 in Eigen::Array& Eigen::PlainObjectBase>::_set_noalias, Eigen::Map, 0, Eigen::Stride<0, 0>> const>>(Eigen::DenseBase, Eigen::Map, 0, Eigen::Stride<0, 0>> const>> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:7 #12 0x7bc87877c899 in void Eigen::PlainObjectBase>::_init1, Eigen::Map, 0, Eigen::Stride<0, 0>> const>, Eigen::CwiseUnaryOp, Eigen::Map, 0, Eigen::Stride<0, 0>> const>>(Eigen::DenseBase, Eigen::Map, 0, Eigen::Stride<0, 0>> const>> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:883:13 #13 0x7bc87877c899 in Eigen::Array::Array, Eigen::Map, 0, Eigen::Stride<0, 0>> const>>(Eigen::CwiseUnaryOp, Eigen::Map, 0, Eigen::Stride<0, 0>> const> const&) /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/Core/Array.h:210:22 #14 0x7bc87877c899 in tmbutils::vector::vector, Eigen::Map, 0, Eigen::Stride<0, 0>> const>>(Eigen::CwiseUnaryOp, Eigen::Map, 0, Eigen::Stride<0, 0>> const>) /data/gannet/ripley/R/test-clang/TMB/include/tmbutils/vector.hpp:24:16 #15 0x7bc87877c899 in tmbutils::vector asVector(SEXPREC*) /data/gannet/ripley/R/test-clang/TMB/include/convert.hpp:114:21 #16 0x7bc8788c51e6 in objective_function::operator()() /data/gannet/ripley/R/packages/tests-clang-ASAN/dsem/src/dsem.cpp:413:5 #17 0x7bc8782e5b91 in getParameterOrder /data/gannet/ripley/R/test-clang/TMB/include/tmb_core.hpp:2065:7 #18 0x5647ad761f76 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:763:11 #19 0x5647ad76f785 in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437:11 #20 0x5647ad81f62a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14 #21 0x5647ad812c24 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16 #22 0x5647ad8111b1 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8 #23 0x5647ad85994c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39 #24 0x5647ad858b08 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16 #25 0x5647ad81426e in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16 #26 0x5647ad811bd8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12 #27 0x5647ad86aa75 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3585:8 #28 0x5647ad8116f0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12 #29 0x5647ad868119 in do_begin /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3001:10 #30 0x5647ad8116f0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1230:12 #31 0x5647ad86f503 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3975:13 #32 0x5647ad81f62a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14 #33 0x5647ad812c24 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16 #34 0x5647ad8111b1 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8 #35 0x5647ad85994c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2398:39 #36 0x5647ad858b08 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2314:16 #37 0x5647ad81426e in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2333:16 #38 0x5647ad811bd8 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1278:12 #39 0x5647ad86fe6a in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3993:9 #40 0x5647ad81f62a in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8150:14 #41 0x5647ad812c24 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7533:16 #42 0x5647ad8111b1 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8 SUMMARY: AddressSanitizer: heap-buffer-overflow /data/gannet/ripley/R/packages/tests-clang-ASAN/dsem/src/dsem.cpp:453:13 in objective_function::operator()() Shadow bytes around the buggy address: 0x7d9892b3ae80: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x7d9892b3af00: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x7d9892b3af80: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x7d9892b3b000: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x7d9892b3b080: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 =>0x7d9892b3b100: 00 00 00 00 00 00 00 00 00 00 00 00 00 00[fa]fa 0x7d9892b3b180: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7d9892b3b200: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x7d9892b3b280: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x7d9892b3b300: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x7d9892b3b380: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb ==1998427==ABORTING