* using log directory ‘/data/gannet/ripley/R/packages/tests-clang-ASAN/apLCMS.Rcheck’
* using R Under development (unstable) (2025-08-27 r88717)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    clang version 21.1.0
    flang version 21.1.0
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘apLCMS/DESCRIPTION’ ... OK
* this is package ‘apLCMS’ version ‘6.8.3’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package ‘apLCMS’ can be installed ... [162s/227s] OK
* used C++ compiler: ‘clang version 21.1.0’
* checking package directory ... OK
* checking whether the package can be loaded ... [19s/25s] OK
* checking whether the package can be loaded with stated dependencies ... [18s/23s] OK
* checking whether the package can be unloaded cleanly ... [17s/23s] OK
* checking whether the namespace can be loaded with stated dependencies ... [17s/22s] OK
* checking whether the namespace can be unloaded cleanly ... [17s/20s] OK
* checking loading without being on the library search path ... [18s/20s] OK
* checking compiled code ... OK
* checking examples ... [29s/32s] ERROR
Running examples in ‘apLCMS-Ex.R’ failed
The error most likely occurred in:

> ### Name: proc.cdf.2d
> ### Title: Compute a 2D Binned Kernel Density Estimate from LC/MS data in
> ###   CDF format.
> ### Aliases: proc.cdf.2d
> ### Keywords: distribution density
> 
> ### ** Examples
> 
> library(msdata)
> filepath <- system.file("microtofq", package = "msdata")
> file <- list.files(filepath, pattern="MM14.mzML",
+                      full.names=TRUE, recursive = TRUE)
> peakInfo <- proc.cdf.2d(file)
=================================================================
==2925512==ERROR: AddressSanitizer: heap-buffer-overflow on address 0x7e03dc17bd50 at pc 0x7b13c4b9f5a7 bp 0x7ffdef26c150 sp 0x7ffdef26c148
READ of size 8 at 0x7e03dc17bd50 thread T0
    #0 0x7b13c4b9f5a6 in FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double) /data/gannet/ripley/R/packages/tests-clang-ASAN/apLCMS/src/CalDen.cpp:521:14
    #1 0x7b13c4bac27f in calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) /data/gannet/ripley/R/packages/tests-clang-ASAN/apLCMS/src/CalDen.cpp:669:34
    #2 0x7b13c4bb8577 in _apLCMS_calculateDensity /data/gannet/ripley/R/packages/tests-clang-ASAN/apLCMS/src/RcppExports.cpp:53:34
    #3 0x5653fa36d047 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c
    #4 0x5653fa378dac in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437:11
    #5 0x5653fa423ac9 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118:14
    #6 0x5653fa416784 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501:16
    #7 0x5653fa414caa in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #8 0x5653fa45cc3c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393:22
    #9 0x5653fa45be01 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306:16
    #10 0x5653fa4156f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328:16
    #11 0x5653fa4156f9 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280:12
    #12 0x5653fa46e647 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567:8
    #13 0x5653fa4151f3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232:12
    #14 0x5653fa4e9851 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:15
    #15 0x5653fa4ec0a0 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317:11
    #16 0x5653fa4ec0a0 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235:5
    #17 0x5653fa4ec132 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242:5
    #18 0x5653fa1f499c in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5
    #19 0x7f13df4115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #20 0x7f13df4116a7 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #21 0x5653fa10d7d4 in _start (/data/gannet/ripley/R/clang-ASAN/bin/exec/R+0x17d4)

0x7e03dc17bd50 is located 0 bytes after 55632-byte region [0x7e03dc16e400,0x7e03dc17bd50)
allocated by thread T0 here:
    #0 0x5653fa1b1f14 in malloc /data/gannet/ripley/Sources2/LLVM/21/latest/compiler-rt/lib/asan/asan_malloc_linux.cpp:67:3
    #1 0x7f13dd01f2fb in operator new(unsigned long) (/lib64/libstdc++.so.6+0x1f2fb) (BuildId: a34f3756a2aefc3d2b7ae49335dfdd1b4555be43)
    #2 0x7b13c4bac27f in calculateDensity(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double, double, double, double, int) /data/gannet/ripley/R/packages/tests-clang-ASAN/apLCMS/src/CalDen.cpp:669:34
    #3 0x7b13c4bb8577 in _apLCMS_calculateDensity /data/gannet/ripley/R/packages/tests-clang-ASAN/apLCMS/src/RcppExports.cpp:53:34
    #4 0x5653fa36d047 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c
    #5 0x5653fa378dac in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1437:11
    #6 0x5653fa423ac9 in bcEval_loop /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:8118:14
    #7 0x5653fa416784 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7501:16
    #8 0x5653fa414caa in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1167:8
    #9 0x5653fa45cc3c in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2393:22
    #10 0x5653fa45be01 in applyClosure_core /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2306:16
    #11 0x5653fa4156f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2328:16
    #12 0x5653fa4156f9 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1280:12
    #13 0x5653fa46e647 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3567:8
    #14 0x5653fa4151f3 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1232:12
    #15 0x5653fa4e9851 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264:15
    #16 0x5653fa4ec0a0 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:317:11
    #17 0x5653fa4ec0a0 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1235:5
    #18 0x5653fa4ec132 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1242:5
    #19 0x5653fa1f499c in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5
    #20 0x7f13df4115f4 in __libc_start_call_main (/lib64/libc.so.6+0x35f4) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #21 0x7f13df4116a7 in __libc_start_main@GLIBC_2.2.5 (/lib64/libc.so.6+0x36a7) (BuildId: a1dda014206b55b07f58fe8db80121b752dc3d03)
    #22 0x5653fa10d7d4 in _start (/data/gannet/ripley/R/clang-ASAN/bin/exec/R+0x17d4)

SUMMARY: AddressSanitizer: heap-buffer-overflow /data/gannet/ripley/R/packages/tests-clang-ASAN/apLCMS/src/CalDen.cpp:521:14 in FindPeak(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<13, Rcpp::PreserveStorage>, double, double, double, double, double)
Shadow bytes around the buggy address:
  0x7e03dc17ba80: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7e03dc17bb00: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7e03dc17bb80: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7e03dc17bc00: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
  0x7e03dc17bc80: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
=>0x7e03dc17bd00: 00 00 00 00 00 00 00 00 00 00[fa]fa fa fa fa fa
  0x7e03dc17bd80: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7e03dc17be00: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7e03dc17be80: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7e03dc17bf00: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
  0x7e03dc17bf80: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
Shadow byte legend (one shadow byte represents 8 application bytes):
  Addressable:           00
  Partially addressable: 01 02 03 04 05 06 07 
  Heap left redzone:       fa
  Freed heap region:       fd
  Stack left redzone:      f1
  Stack mid redzone:       f2
  Stack right redzone:     f3
  Stack after return:      f5
  Stack use after scope:   f8
  Global redzone:          f9
  Global init order:       f6
  Poisoned by user:        f7
  Container overflow:      fc
  Array cookie:            ac
  Intra object redzone:    bb
  ASan internal:           fe
  Left alloca redzone:     ca
  Right alloca redzone:    cb
==2925512==ABORTING
* DONE
Status: 1 ERROR