* using log directory ‘/data/gannet/ripley/R/packages/tests-clang-SAN/CpDyna.Rcheck’ * using R Under development (unstable) (2018-12-03 r75756) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘CpDyna/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CpDyna’ version ‘1.0’ * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package ‘CpDyna’ can be installed ... [126s/104s] OK * checking package directory ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking contents of ‘data’ directory ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [43s/43s] OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... WARNING Error in re-building vignettes: ... ================================================================= ==27820==ERROR: AddressSanitizer: heap-buffer-overflow on address 0x625004604840 at pc 0x7f8ba94da360 bp 0x7fff51d1d9b0 sp 0x7fff51d1d9a8 READ of size 8 at 0x625004604840 thread T0 #0 0x7f8ba94da35f in BuildCounts_C(Rcpp::Vector<14, Rcpp::PreserveStorage>&, arma::Row const&, arma::Col const&) /data/gannet/ripley/R/packages/tests-clang-SAN/CpDyna/src/MinimalPartition.cpp:94:16 #1 0x7f8ba94daa9e in GnuToX(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-clang-SAN/CpDyna/src/MinimalPartition.cpp:118:2 #2 0x7f8ba9654dcd in _CpDyna_GnuToX /data/gannet/ripley/R/packages/tests-clang-SAN/CpDyna/src/RcppExports.cpp:32:34 #3 0x7fad70 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576:17 #4 0x9f68a2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7320:21 #5 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #6 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #7 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #8 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #9 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #10 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #11 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #12 0x9de2e0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743:12 #13 0xa6056c in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2806:8 #14 0x9ddd1a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:695:12 #15 0xa69fe7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3185:13 #16 0x9f2848 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6805:14 #17 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #18 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #19 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #20 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #21 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #22 0xa4a0ea in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8 #23 0x9de432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:643:9 #24 0xa6c588 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3237:9 #25 0xbc1729 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1374:11 #26 0x9ef1f5 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6825:15 #27 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #28 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #29 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #30 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #31 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #32 0xa4a0ea in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8 #33 0xa906a2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4998:15 #34 0xa90aeb in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5040:10 #35 0xa0ab9b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6537:20 #36 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #37 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #38 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #39 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #40 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #41 0xa4a0ea in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8 #42 0xa906a2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4998:15 #43 0xa90aeb in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5040:10 #44 0xa0ab9b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6537:20 #45 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #46 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #47 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #48 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #49 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #50 0xa4a0ea in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8 #51 0xa906a2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4998:15 #52 0xa90aeb in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5040:10 #53 0xa0ab9b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6537:20 #54 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #55 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #56 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #57 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #58 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #59 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #60 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #61 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #62 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #63 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #64 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #65 0x9de2e0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743:12 #66 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #67 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #68 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #69 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #70 0xa4a0ea in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8 #71 0xa906a2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4998:15 #72 0xa90aeb in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5040:10 #73 0xa0ab9b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6537:20 #74 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #75 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #76 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #77 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #78 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #79 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #80 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #81 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #82 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #83 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #84 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #85 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #86 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #87 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #88 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #89 0xbccc1e in dispatchMethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:436:16 #90 0xbcb511 in Rf_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:476:10 #91 0xbce027 in do_usemethod /data/gannet/ripley/R/svn/R-devel/src/main/objects.c:565:9 #92 0x9ef1f5 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6825:15 #93 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #94 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #95 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #96 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #97 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #98 0xa4a0ea in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8 #99 0xa906a2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4998:15 #100 0xa90aeb in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5040:10 #101 0xa0ab9b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6537:20 #102 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #103 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #104 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #105 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #106 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #107 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #108 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #109 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #110 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #111 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #112 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #113 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #114 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #115 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #116 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #117 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #118 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #119 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #120 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #121 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #122 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #123 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #124 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #125 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #126 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #127 0xa4a0ea in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8 #128 0xa906a2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4998:15 #129 0xa90aeb in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5040:10 #130 0xa0ab9b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6537:20 #131 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #132 0xa4a0ea in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8 #133 0xa906a2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4998:15 #134 0xa90aeb in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5040:10 #135 0xa0ab9b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6537:20 #136 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #137 0xa4a0ea in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8 #138 0xa906a2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4998:15 #139 0xa90aeb in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5040:10 #140 0xa0ab9b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6537:20 #141 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #142 0xa4a0ea in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8 #143 0xa906a2 in FORCE_PROMISE /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:4998:15 #144 0xa90aeb in getvar /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:5040:10 #145 0xa0ab9b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6537:20 #146 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #147 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #148 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #149 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #150 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #151 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #152 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #153 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #154 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #155 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #156 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #157 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #158 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #159 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #160 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #161 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #162 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #163 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #164 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #165 0x9de2e0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743:12 #166 0xb496b0 in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:260:2 #167 0xb4e070 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:310:11 #168 0xb4de55 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1089:5 #169 0x53deca in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29:5 #170 0x7f8bbecd111a in __libc_start_main (/lib64/libc.so.6+0x2311a) #171 0x42f119 in _start (/data/gannet/ripley/R/R-clang-SAN/bin/exec/R+0x42f119) 0x625004604840 is located 0 bytes to the right of 8000-byte region [0x625004602900,0x625004604840) allocated by thread T0 here: #0 0x4ff700 in __interceptor_posix_memalign /data/gannet/ripley/Sources/LLVM/7.0.0/llvm-7.0.0.src/projects/compiler-rt/lib/asan/asan_malloc_linux.cc:219:3 #1 0x7f8ba958f206 in double* arma::memory::acquire(unsigned int) /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/memory.hpp:82:18 #2 0x7f8ba958f206 in arma::Mat::init_warm(unsigned int, unsigned int) /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:333 #3 0x7f8ba958eaca in arma::Mat::operator=(arma::subview const&) /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/Mat_meat.hpp:1888:5 #4 0x7f8ba953cdc7 in arma::Row::Row >(arma::Base > const&) /data/gannet/ripley/R/test-clang/RcppArmadillo/include/armadillo_bits/Row_meat.hpp:359:12 #5 0x7f8ba94daa8f in GnuToX(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, int) /data/gannet/ripley/R/packages/tests-clang-SAN/CpDyna/src/MinimalPartition.cpp:118:20 #6 0x7f8ba9654dcd in _CpDyna_GnuToX /data/gannet/ripley/R/packages/tests-clang-SAN/CpDyna/src/RcppExports.cpp:32:34 #7 0x7fad70 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:576:17 #8 0x9f68a2 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7320:21 #9 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #10 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #11 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #12 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #13 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #14 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #15 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #16 0x9de2e0 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:743:12 #17 0xa6056c in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2806:8 #18 0x9ddd1a in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:695:12 #19 0xa69fe7 in do_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3185:13 #20 0x9f2848 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6805:14 #21 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #22 0xa51707 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c #23 0xa4e3f9 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1706:16 #24 0xa021b8 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6773:12 #25 0x9dd10d in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:620:8 #26 0xa4a0ea in forcePromise /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:516:8 #27 0x9de432 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:643:9 #28 0xa6c588 in do_withVisible /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:3237:9 #29 0xbc1729 in do_internal /data/gannet/ripley/R/svn/R-devel/src/main/names.c:1374:11 #30 0x9ef1f5 in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:6825:15 SUMMARY: AddressSanitizer: heap-buffer-overflow /data/gannet/ripley/R/packages/tests-clang-SAN/CpDyna/src/MinimalPartition.cpp:94:16 in BuildCounts_C(Rcpp::Vector<14, Rcpp::PreserveStorage>&, arma::Row const&, arma::Col const&) Shadow bytes around the buggy address: 0x0c4a808b88b0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x0c4a808b88c0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x0c4a808b88d0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x0c4a808b88e0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 0x0c4a808b88f0: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 =>0x0c4a808b8900: 00 00 00 00 00 00 00 00[fa]fa fa fa fa fa fa fa 0x0c4a808b8910: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x0c4a808b8920: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x0c4a808b8930: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x0c4a808b8940: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa 0x0c4a808b8950: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa Shadow byte legend (one shadow byte represents 8 application bytes): Addressable: 00 Partially addressable: 01 02 03 04 05 06 07 Heap left redzone: fa Freed heap region: fd Stack left redzone: f1 Stack mid redzone: f2 Stack right redzone: f3 Stack after return: f5 Stack use after scope: f8 Global redzone: f9 Global init order: f6 Poisoned by user: f7 Container overflow: fc Array cookie: ac Intra object redzone: bb ASan internal: fe Left alloca redzone: ca Right alloca redzone: cb Shadow gap: cc ==27820==ABORTING * DONE Status: 1 WARNING