* using log directory ‘/data/gannet/ripley/R/packages/tests-gcc16/BayesSUR.Rcheck’
* using R Under development (unstable) (2026-02-18 r89435)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-16 (GCC) 16.0.1 20260215 (experimental)
    GNU Fortran (GCC) 16.0.1 20260215 (experimental)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-02-18 20:20:39 UTC
* using option ‘--no-stop-on-test-error’
* checking for file ‘BayesSUR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BayesSUR’ version ‘2.3-1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BayesSUR’ can be installed ... [357s/297s] WARNING
Found the following significant warnings:
  drive.cpp:980:23: warning: 'void omp_set_nested(int)' is deprecated [-Wdeprecated-declarations]
  drive.cpp:986:27: warning: 'void omp_set_nested(int)' is deprecated [-Wdeprecated-declarations]
  pugixml.cpp:453:58: warning: '*other.pugi::impl::{anonymous}::xml_document_struct::pugi::xml_node_struct.pugi::xml_node_struct::header' is used uninitialized [-Wuninitialized]
See ‘/data/gannet/ripley/R/packages/tests-gcc16/BayesSUR.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-16 (GCC) 16.0.1 20260215 (experimental)’
* checking C++ specification ... INFO
  specified C++17
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [25s/34s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [9s/12s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [21s/35s] OK
* checking PDF version of manual ... [8s/16s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 WARNING
See
  ‘/data/gannet/ripley/R/packages/tests-gcc16/BayesSUR.Rcheck/00check.log’
for details.

Time 8:34.59, 477.08 + 33.57