* installing *source* package ‘mixor’ ... ** package ‘mixor’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-gcc11/mixor/src' /usr/local/gcc11/bin/gcc -I"/data/gannet/ripley/R/R-gcc11/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -c mixor_init.c -o mixor_init.o /usr/local/gcc11/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -pedantic -c mixord_dll.f90 -o mixord_dll.o mixord_dll.f90:4138:15: 4138 | SUBROUTINE MPYM (A,B,C,MA,NA,MSA,MSB,NB) | 1 ...... 5200 | USE INTERFACE_MPYM | 2 Warning: INTENT mismatch in argument 'b' between (1) and (2) mixord_dll.f90:3405:16: 205 | SUBROUTINE GRMCV(A,B,X,C,N) | 2 ...... 3405 | SUBROUTINE GRMCV(A,B,X,C,N) | 1 Warning: INTENT mismatch in argument 'a' between (1) and (2) mixord_dll.f90:3660:16: 225 | SUBROUTINE MPDSD(A,B,C,N) | 2 ...... 3660 | SUBROUTINE MPDSD(A,B,C,N) | 1 Warning: INTENT mismatch in argument 'b' between (1) and (2) mixord_dll.f90:4426:16: 366 | SUBROUTINE YSAME(YVEC,N,NSAME) | 2 ...... 4426 | SUBROUTINE YSAME(YVEC,N,NSAME) | 1 Warning: Shape mismatch in argument 'yvec' between (1) and (2) mixord_dll.f90:698:19: 617 | SUBROUTINE mainloop(Y, X, W, WTs, NPAR, NTOT, N, IDS, & | 2 ...... 698 | SUBROUTINE mainloop(Y,X,W,WTs,NPAR,NTOT,N,IDS, & | 1 Warning: INTENT mismatch in argument 'icen' between (1) and (2) mixord_dll.f90:818:54: 818 | INTEGER :: I,H,J,L!HR, | 1 Warning: Unused variable 'i' declared at (1) [-Wunused-variable] mixord_dll.f90:1065:26: 1065 | SUBROUTINE STARTVAL(N,NPAR,NTOT,NALL,NOMU,P,R,RR,KS,NGAM,NRP1,IER, & | 1 Warning: Unused dummy argument 'npar' at (1) [-Wunused-dummy-argument] mixord_dll.f90:4538:41: 4538 | integer(kind=4)::j,jj,lk,ii,i,ll,l,jz,mab | 1 Warning: Unused variable 'jz' declared at (1) [-Wunused-variable] mixord_dll.f90:4628:35: 4628 | SUBROUTINE INVS(A,N,C,W,IER,VERBOSE) | 1 Warning: Unused dummy argument 'verbose' at (1) [-Wunused-dummy-argument] mixord_dll.f90:5085:17: 5085 | END FUNCTION PHIY | ^ Warning: '__result_phiy' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:5052:26: 5052 | real(kind=8) FUNCTION PHIY(Z,nfn) | ^ note: '__result_phiy' was declared here mixord_dll.f90:4999:27: 4999 | REAL(kind=8) FUNCTION PHIFN(Z,nfn) | ^ Warning: '__result_phifn' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:1299:64: 1299 | IWRKP1(L) = IWRKP1(L) + (YDEV * IWORKP1(L)) | ^ Warning: 'ydev' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:1149:9: 1149 | IF(KEEP) THEN | ^ Warning: 'keep' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:2210:68: 2210 | deriv1 = (probp1/prob) / DEXP(WTAU) | ^ Warning: 'probp1' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:2209:68: 2209 | deriv0 = (probp0/prob) / DEXP(WTAU) | ^ Warning: 'probp0' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:2077:45: 2077 | psum = psum + DLOG(prob) | ^ Warning: 'prob' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:2022:28: 2022 | IF (INDC.EQ.1) THEN | ^ Warning: 'indc' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:2119:66: 2119 | IDERQ(IND) = IDERQ(IND) + DZT*IWI(iw) | ^ Warning: 'dzt' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:2934:41: 2934 | GAMMA(MAXJ-1) = tempparm - RADD*MU1 | ^ Warning: 'tempparm' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:2921:54: 2921 | cumprob = cumprob + (0.5d0 * (1.0d0 - cumprob)) | ^ Warning: 'cumprob' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:3368:23: 3368 | integer(kind=4):: L | ^ Warning: 'l' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:3538:18: 3538 | INTEGER :: I, K | ^ Warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:3581:24: 3581 | integer(kind=4) :: k,i | ^ Warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:3625:24: 3625 | integer(kind=4) :: k,i | ^ Warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:3706:48: 3706 | integer(kind=4) :: k,icb,iccb,j,inb,incb,llb,lhb,jnb,i,ina,m | ^ Warning: 'llb' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:3706:52: 3706 | integer(kind=4) :: k,icb,iccb,j,inb,incb,llb,lhb,jnb,i,ina,m | ^ Warning: 'lhb' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:3764:35: 3764 | INB=INB+INCB+ICB | ^ Warning: 'incb' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:3758:39: 3758 | X=X+A(INA)*B(INB) | ^ Warning: 'inb' may be used uninitialized in this function [-Wmaybe-uninitialized] mixord_dll.f90:4396:22: 4396 | integer(kind=4)::l,j | ^ Warning: 'l' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/local/gcc11/bin/gcc -shared -L/usr/local/gcc11/lib64 -L/usr/local/lib64 -o mixor.so mixor_init.o mixord_dll.o -lgfortran -lm -lquadmath make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-gcc11/mixor/src' make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-gcc11/mixor/src' make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-gcc11/mixor/src' installing to /data/gannet/ripley/R/packages/tests-gcc11/mixor.Rcheck/00LOCK-mixor/00new/mixor/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixor)