* installing *source* package ‘npsp’ ... ** package ‘npsp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-gcc10/npsp/src' /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c tql2.f -o tql2.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c err_module.f90 -o err_module.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c dgelsyr.f -o dgelsyr.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c dsytrfi.f90 -o dsytrfi.o dsytrfi.f90:27:40: 23 | CALL DSYTRF( 'U', N, AI, N, IPIV, tmp, LWORK, INFO ) | 2 ...... 27 | CALL DSYTRF( 'U', N, AI, N, IPIV, WORK, LWORK, INFO ) | 1 Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (scalar and rank-1) /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c grid_module.f90 -o grid_module.o /usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c init.c -o init.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c linearalgebra.f90 -o linearalgebra.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c linreg_module.f90 -o linreg_module.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c besselzeros.f90 -o besselzeros.o besselzeros.f90:68:48: 68 | REAL(8), ALLOCATABLE :: e(:), d(:), z(:,:) | ^ Warning: 'z.offset' may be used uninitialized in this function [-Wmaybe-uninitialized] besselzeros.f90:74:0: 74 | z=0.0D0 | Warning: 'z.dim[0].ubound' may be used uninitialized in this function [-Wmaybe-uninitialized] besselzeros.f90:68:48: 68 | REAL(8), ALLOCATABLE :: e(:), d(:), z(:,:) | ^ Warning: 'z.dim[1].stride' may be used uninitialized in this function [-Wmaybe-uninitialized] besselzeros.f90:68:48: Warning: 'z.dim[1].ubound' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c lp_module.f90 -o lp_module.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c svar_module.f90 -o svar_module.o /usr/local/gcc10/bin/gcc -shared -L/usr/local/gcc10/lib64 -L/usr/local/lib64 -o npsp.so besselzeros.o dgelsyr.o dsytrfi.o err_module.o grid_module.o init.o linearalgebra.o linreg_module.o lp_module.o svar_module.o tql2.o -L/data/gannet/ripley/R/R-gcc10/lib -lRlapack -L/data/gannet/ripley/R/R-gcc10/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath make[3]: Entering directory '/data/gannet/ripley/R/packages/tests-gcc10/npsp/src' make[3]: Nothing to be done for 'npsp.so'. make[3]: Leaving directory '/data/gannet/ripley/R/packages/tests-gcc10/npsp/src' make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-gcc10/npsp/src' make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-gcc10/npsp/src' /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c tql2.f -o tql2.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c err_module.f90 -o err_module.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c dgelsyr.f -o dgelsyr.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c dsytrfi.f90 -o dsytrfi.o dsytrfi.f90:27:40: 23 | CALL DSYTRF( 'U', N, AI, N, IPIV, tmp, LWORK, INFO ) | 2 ...... 27 | CALL DSYTRF( 'U', N, AI, N, IPIV, WORK, LWORK, INFO ) | 1 Warning: Rank mismatch between actual argument at (1) and actual argument at (2) (scalar and rank-1) /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c grid_module.f90 -o grid_module.o /usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c init.c -o init.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c linearalgebra.f90 -o linearalgebra.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c linreg_module.f90 -o linreg_module.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c besselzeros.f90 -o besselzeros.o besselzeros.f90:68:48: 68 | REAL(8), ALLOCATABLE :: e(:), d(:), z(:,:) | ^ Warning: 'z.offset' may be used uninitialized in this function [-Wmaybe-uninitialized] besselzeros.f90:74:0: 74 | z=0.0D0 | Warning: 'z.dim[0].ubound' may be used uninitialized in this function [-Wmaybe-uninitialized] besselzeros.f90:68:48: 68 | REAL(8), ALLOCATABLE :: e(:), d(:), z(:,:) | ^ Warning: 'z.dim[1].stride' may be used uninitialized in this function [-Wmaybe-uninitialized] besselzeros.f90:68:48: Warning: 'z.dim[1].ubound' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c lp_module.f90 -o lp_module.o /usr/local/gcc10/bin/gfortran -fno-optimize-sibling-calls -fpic -g -O2 -mtune=native -Wall -fallow-argument-mismatch -c svar_module.f90 -o svar_module.o make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-gcc10/npsp/src' installing to /data/gannet/ripley/R/packages/tests-gcc10/npsp.Rcheck/00LOCK-npsp/00new/npsp/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (npsp)