* installing *source* package ‘PET’ ...
** package ‘PET’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-gcc10/PET/src'
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c Hough.c -o Hough.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c PET_init.c -o PET_init.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c amatrix.c -o amatrix.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c art.c -o art.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c calc.c -o calc.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c cg.c -o cg.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c em.c -o em.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c eval.c -o eval.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c imgtools.c -o imgtools.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c iradon.c -o iradon.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c it.c -o it.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c itreadargs.c -o itreadargs.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c misc.c -o misc.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c oradLI.c -o oradLI.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c oradNN.c -o oradNN.o
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c oradSINC.c -o oradSINC.o
art.c: In function 'FAST_ART':
art.c:128:10: warning: variable 'tempXv' set but not used [-Wunused-but-set-variable]
  128 |   float *tempXv,*tempBv;
      |          ^~~~~~
art.c: In function 'SLOW_ART':
art.c:239:10: warning: variable 'tempXv' set but not used [-Wunused-but-set-variable]
  239 |   float *tempXv,*tempBv;
      |          ^~~~~~
Hough.c: In function 'Hough4':
Hough.c:41:10: warning: variable 'theta_min' set but not used [-Wunused-but-set-variable]
   41 |   double theta_min;
      |          ^~~~~~~~~
Hough.c:40:38: warning: variable 'y' set but not used [-Wunused-but-set-variable]
   40 |   double *costheta,*sintheta,theta,x,y;
      |                                      ^
Hough.c: In function 'Hough3':
Hough.c:118:10: warning: variable 'theta_min' set but not used [-Wunused-but-set-variable]
  118 |   double theta_min;
      |          ^~~~~~~~~
Hough.c: In function 'Hough2':
Hough.c:173:10: warning: variable 'theta_min' set but not used [-Wunused-but-set-variable]
  173 |   double theta_min;
      |          ^~~~~~~~~
Hough.c: In function 'Hough1':
Hough.c:227:10: warning: variable 'theta_min' set but not used [-Wunused-but-set-variable]
  227 |   double theta_min;
      |          ^~~~~~~~~
/usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -c sparse.c -o sparse.o
amatrix.c: In function 'RegulateMatrix':
amatrix.c:234:10: warning: variable 'tempVv' set but not used [-Wunused-but-set-variable]
  234 |   float *tempVv;
      |          ^~~~~~
amatrix.c: In function 'RegulateL1Matrix':
amatrix.c:289:10: warning: variable 'tempVv' set but not used [-Wunused-but-set-variable]
  289 |   float *tempVv;
      |          ^~~~~~
amatrix.c: In function 'GenerateAMatrixColumn':
amatrix.c:784:9: warning: variable 'onedivsq2' set but not used [-Wunused-but-set-variable]
  784 |   float onedivsq2,psi,pidivDeltaX,costheta,sintheta,of;
      |         ^~~~~~~~~
calc.c: In function 'BackFilter':
calc.c:335:19: warning: variable 'M' set but not used [-Wunused-but-set-variable]
  335 |   int i,m,n,mm,nn,M,N,OldHeight,OldWidth;
      |                   ^
calc.c: In function 'CentralSliceCZ':
calc.c:700:49: warning: variable 'rhomin' set but not used [-Wunused-but-set-variable]
  700 |   float DC,deltatheta,theta,thetaadj,*realtheta,rhomin,deltarho;
      |                                                 ^~~~~~
imgtools.c: In function 'ReadPET':
imgtools.c:1005:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
 1005 |   size_t result;
      |          ^~~~~~
oradSINC.c: In function 'radonSINC':
oradSINC.c:52:10: warning: variable 'idx' set but not used [-Wunused-but-set-variable]
   52 |   double idx,mintrig,psi;
      |          ^~~
imgtools.c: In function 'ReadFIFHeader':
imgtools.c:1148:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
 1148 |   size_t result;
      |          ^~~~~~
imgtools.c: In function 'ReadFIF':
imgtools.c:1222:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
 1222 |   size_t result;
      |          ^~~~~~
imgtools.c: In function 'ReadAnalyze':
imgtools.c:1616:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
 1616 |   size_t result;
      |          ^~~~~~
imgtools.c:1614:21: warning: variable 'OffSet' set but not used [-Wunused-but-set-variable]
 1614 |   float ScaleFactor,OffSet;
      |                     ^~~~~~
sparse.c: In function 'ReadSIFHeader':
sparse.c:607:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
  607 |   size_t result;
      |          ^~~~~~
sparse.c: In function 'ReadSIF':
sparse.c:657:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
  657 |   size_t result;
      |          ^~~~~~
sparse.c: In function 'MeanFilterVector':
sparse.c:1537:13: warning: variable 'area' set but not used [-Wunused-but-set-variable]
 1537 |   float sum,area,*tempVv,*tempNv,*tempKernM;
      |             ^~~~
iradon.c: In function 'iradon':
iradon.c:271:5: warning: 'spectrum' may be used uninitialized in this function [-Wmaybe-uninitialized]
  271 |     FreeImage(spectrum);
      |     ^~~~~~~~~~~~~~~~~~~
iradon.c: In function 'loadFile':
iradon.c:568:9: warning: 'list' may be used uninitialized in this function [-Wmaybe-uninitialized]
  568 |   return(list);
      |         ^
iradon.c:404:16: warning: 'typeF' may be used uninitialized in this function [-Wmaybe-uninitialized]
  404 |     OutImage = ReadImage(fileName, typeF);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~
iradon.c: In function 'writeFile':
iradon.c:684:19: warning: 'N' may be used uninitialized in this function [-Wmaybe-uninitialized]
  684 |         SaveImage=NewFloatImage(fileName, M, N, _RealArray);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iradon.c:684:19: warning: 'M' may be used uninitialized in this function [-Wmaybe-uninitialized]
iradon.c:772:5: warning: 'typeF' may be used uninitialized in this function [-Wmaybe-uninitialized]
  772 |     WriteImage(SaveImage, typeF);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/local/gcc10/bin/gcc -shared -L/usr/local/gcc10/lib64 -L/usr/local/lib64 -o PET.so Hough.o PET_init.o amatrix.o art.o calc.o cg.o em.o eval.o imgtools.o iradon.o it.o itreadargs.o misc.o oradLI.o oradNN.o oradSINC.o sparse.o
/usr/bin/ld: it.o:(.bss+0x610): multiple definition of `DebugNiveau'; iradon.o:(.data+0x0): first defined here
/usr/bin/ld: it.o:(.bss+0x480): multiple definition of `IniFile'; iradon.o:(.bss+0x0): first defined here
/usr/bin/ld: it.o:(.bss+0x598): multiple definition of `multtemp'; iradon.o:(.bss+0x118): first defined here
/usr/bin/ld: it.o:/data/gannet/ripley/R/packages/tests-gcc10/PET/src/it.c:106: multiple definition of `LogFileName'; iradon.o:/data/gannet/ripley/R/packages/tests-gcc10/PET/src/iradon.h:15: first defined here
/usr/bin/ld: it.o:/data/gannet/ripley/R/packages/tests-gcc10/PET/src/it.c:105: multiple definition of `LogFile'; iradon.o:/data/gannet/ripley/R/packages/tests-gcc10/PET/src/iradon.h:14: first defined here
collect2: error: ld returned 1 exit status
make[1]: *** [/data/gannet/ripley/R/R-gcc10/share/make/shlib.mk:6: PET.so] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-gcc10/PET/src'
ERROR: compilation failed for package ‘PET’
* removing ‘/data/gannet/ripley/R/packages/tests-gcc10/PET.Rcheck/PET’