* installing *source* package ‘HWxtest’ ... ** package ‘HWxtest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src' /usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c HWmtest.c -o HWmtest.o HWmtest.c: In function 'mtest': HWmtest.c:147:14: warning: unused variable 'ranx' [-Wunused-variable] 147 | unsigned ranx; | ^~~~ HWmtest.c:146:27: warning: unused variable 'a' [-Wunused-variable] 146 | unsigned long long t, a = 1540315826LL; | ^ HWmtest.c:146:24: warning: unused variable 't' [-Wunused-variable] 146 | unsigned long long t, a = 1540315826LL; | ^ HWmtest.c:142:19: warning: variable 'ii' set but not used [-Wunused-but-set-variable] 142 | unsigned char ii; | ^~ HWmtest.c:141:24: warning: variable 'c' set but not used [-Wunused-but-set-variable] 141 | unsigned long long c; | ^ HWmtest.c:140:14: warning: variable 'Q' set but not used [-Wunused-but-set-variable] 140 | unsigned Q[256]; | ^ /usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c HWxcount.c -o HWxcount.o HWmtest.c:370:38: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] 370 | hdex = statSpan * (x - leftStat); | ~~~^~~~~~~~~~~ HWmtest.c:370:38: warning: 'leftStat' may be used uninitialized in this function [-Wmaybe-uninitialized] HWmtest.c:370:33: warning: 'statSpan' may be used uninitialized in this function [-Wmaybe-uninitialized] 370 | hdex = statSpan * (x - leftStat); | ~~~~~~~~~^~~~~~~~~~~~~~~~ /usr/local/gcc10/bin/gcc -I"/data/gannet/ripley/R/R-gcc10/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c HWxtest.c -o HWxtest.o /usr/local/gcc10/bin/gcc -shared -L/usr/local/gcc10/lib64 -L/usr/local/lib64 -o HWxtest.so HWmtest.o HWxcount.o HWxtest.o /usr/bin/ld: HWxtest.o:/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src/HWxtest.c:68: multiple definition of `start'; HWxcount.o:/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src/HWxcount.c:86: first defined here /usr/bin/ld: HWxtest.o:/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src/HWxtest.c:69: multiple definition of `timeLimit'; HWxcount.o:/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src/HWxcount.c:87: first defined here /usr/bin/ld: HWxtest.o:/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src/HWxtest.c:74: multiple definition of `tableCount'; HWxcount.o:/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src/HWxcount.c:80: first defined here /usr/bin/ld: HWxtest.o:/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src/HWxtest.c:67: multiple definition of `nAlleles'; HWxcount.o:/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src/HWxcount.c:79: first defined here /usr/bin/ld: HWxtest.o:/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src/HWxtest.c:67: multiple definition of `Rbytes'; HWxcount.o:/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src/HWxcount.c:79: first defined here /usr/bin/ld: HWxtest.o:/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src/HWxtest.c:66: multiple definition of `Rarray'; HWxcount.o:/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src/HWxcount.c:78: first defined here collect2: error: ld returned 1 exit status make[2]: *** [/data/gannet/ripley/R/R-gcc10/share/make/shlib.mk:6: HWxtest.so] Error 1 make[2]: Target 'all' not remade because of errors. make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-gcc10/HWxtest/src' ERROR: compilation failed for package ‘HWxtest’ * removing ‘/data/gannet/ripley/R/packages/tests-gcc10/HWxtest.Rcheck/HWxtest’