* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/topologyGSA.Rcheck’
* using R Under development (unstable) (2025-12-24 r89227)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘topologyGSA/DESCRIPTION’ ... OK
* this is package ‘topologyGSA’ version ‘1.5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘topologyGSA’ can be installed ... [104s/438s] WARNING
Found the following significant warnings:
  Warning: stack imbalance in 'is.environment', 25 then 27
  Warning: stack imbalance in 'if', 23 then 25
  Warning: stack imbalance in 'if', 21 then 23
  Warning: stack imbalance in '{', 17 then 19
  Warning: stack imbalance in 'is.environment', 43 then 45
  Warning: stack imbalance in 'if', 41 then 43
  Warning: stack imbalance in 'if', 39 then 41
  Warning: stack imbalance in '{', 35 then 37
See ‘/data/gannet/ripley/R/packages/tests-devel/topologyGSA.Rcheck/00install.out’ for details.
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [31s/80s] OK
* checking whether the package can be loaded with stated dependencies ... [32s/110s] OK
* checking whether the package can be unloaded cleanly ... [34s/159s] OK
* checking whether the namespace can be loaded with stated dependencies ... [33s/109s] NOTE
Warning: stack imbalance in 'is.environment', 31 then 33
Warning: stack imbalance in 'if', 29 then 31
Warning: stack imbalance in 'if', 27 then 29
Warning: stack imbalance in '{', 23 then 25

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
* checking whether the namespace can be unloaded cleanly ... [32s/194s] OK
* checking loading without being on the library search path ... [30s/42s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [102s/113s] NOTE
Warning: stack imbalance in 'is.environment', 31 then 33
Warning: stack imbalance in 'if', 29 then 31
Warning: stack imbalance in 'if', 27 then 29
Warning: stack imbalance in '{', 23 then 25
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [36s/57s] OK
* checking PDF version of manual ... [6s/10s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/data/gannet/ripley/R/packages/tests-devel/topologyGSA.Rcheck/00check.log’
for details.

Time 29:22.46, 687.64 + 54.87