* installing *source* package ‘hsdar’ ... ** package ‘hsdar’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘clang version 17.0.0 (https://github.com/llvm/llvm-project.git f56e84736297a12c39cf8fd69b279ba44a15ba82)’ using Fortran compiler: ‘flang-new version 17.0.0 (https://github.com/llvm/llvm-project.git f56e84736297a12c39cf8fd69b279ba44a15ba82)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-flang/hsdar/src' /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c LIDF.f90 -o LIDF.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c MODULE_PRO4SAIL.f90 -o MODULE_PRO4SAIL.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c dataSpec_P5B_PROSAIL.f90 -o dataSpec_P5B_PROSAIL.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c PRO4SAIL.f90 -o PRO4SAIL.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c adminparallel.f90 -o adminparallel.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c apply_response.f90 -o apply_response.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c bandDepthRatioIndices.f90 -o bandDepthRatioIndices.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c c2lablas.f -o c2lablas.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c checkhull.f90 -o checkhull.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c dataSpec_P5B_PROSPECT.f90 -o dataSpec_P5B_PROSPECT.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c dataSpec_PDB_PROSPECT.f90 -o dataSpec_PDB_PROSPECT.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c differenciate.f90 -o differenciate.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c dladgen.f -o dladgen.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c interpolate.f90 -o interpolate.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c localMaxima.f90 -o localMaxima.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c main_PROSAIL.f90 -o main_PROSAIL.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c main_PROSPECT_5B.f90 -o main_PROSPECT_5B.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c main_PROSPECT_D.f90 -o main_PROSPECT_D.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c meanfilter.f90 -o meanfilter.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c prospect_5B.f90 -o prospect_5B.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c prospect_DB.f90 -o prospect_DB.o /usr/local/clang-trunk/bin/clang -I"/data/gannet/ripley/R/R-flang/include" -DNDEBUG -isystem /usr/local/clang-trunk/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c pt2f.c -o pt2f.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c recursiveNRI.f90 -o recursiveNRI.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c recursiveSR.f90 -o recursiveSR.o /usr/local/clang-trunk/bin/clang -I"/data/gannet/ripley/R/R-flang/include" -DNDEBUG -isystem /usr/local/clang-trunk/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c sam.f90 -o sam.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c smgm.f90 -o smgm.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c suh.f90 -o suh.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c tav_abs_PROSPECT_5B.f90 -o tav_abs_PROSPECT_5B.o /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c tav_abs_PROSPECT_D.f90 -o tav_abs_PROSPECT_D.o /usr/local/clang-trunk/bin/clang -I"/data/gannet/ripley/R/R-flang/include" -DNDEBUG -isystem /usr/local/clang-trunk/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c unmix.c -o unmix.o unmix.c:221:10: warning: variable 'errorval' set but not used [-Wunused-but-set-variable] 221 | double errorval; | ^ 1 warning generated. /usr/local/clang-trunk/bin/flang-new -fpic -O2 -pedantic -c volscatt.f90 -o volscatt.o /usr/local/clang-trunk/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang-trunk/lib -L/usr/local/lib64 -o hsdar.so LIDF.o MODULE_PRO4SAIL.o PRO4SAIL.o adminparallel.o apply_response.o bandDepthRatioIndices.o c2lablas.o checkhull.o dataSpec_P5B_PROSAIL.o dataSpec_P5B_PROSPECT.o dataSpec_PDB_PROSPECT.o differenciate.o dladgen.o interpolate.o localMaxima.o main_PROSAIL.o main_PROSPECT_5B.o main_PROSPECT_D.o meanfilter.o prospect_5B.o prospect_DB.o pt2f.o recursiveNRI.o recursiveSR.o registerDynamicSymbol.o sam.o smgm.o suh.o tav_abs_PROSPECT_5B.o tav_abs_PROSPECT_D.o unmix.o volscatt.o -lFortran_main -lFortranRuntime -lFortranDecimal -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-flang/hsdar/src' installing to /data/gannet/ripley/R/packages/tests-flang/Libs/hsdar-lib/00LOCK-hsdar/00new/hsdar/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘predict’ with signature ‘object=".preProcessHyperspectral"’: no definition for class “.preProcessHyperspectral” in method for ‘predictHyperspec’ with signature ‘object="train",newdata=".CaretHyperspectral",preProcess="missing"’: no definition for class “train” in method for ‘predictHyperspec’ with signature ‘object="train",newdata=".CaretHyperspectral",preProcess="function"’: no definition for class “train” Creating a generic function for ‘apply’ from package ‘base’ in package ‘hsdar’ Error : in method for ‘[’ with signature ‘x="DistMat3D"’: arguments (‘drop’) after ‘...’ in the generic must appear in the method, in the same place at the end of the argument list Error: unable to load R code in package ‘hsdar’ Execution halted ERROR: lazy loading failed for package ‘hsdar’ * removing ‘/data/gannet/ripley/R/packages/tests-flang/Libs/hsdar-lib/hsdar’ Command exited with non-zero status 1 Time 1:07.84, 32.97 + 2.78