* installing *source* package ‘rxode2’ ... ** package ‘rxode2’ successfully unpacked and MD5 sums checked ** using staged installation R Under development (unstable) (2024-09-28 r87201) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > ## This is only for rxode2 > for (f in c("inst/include/rxode2_RcppExports.h", "src/RcppExports.cpp")) { + l <- readLines(f) + w <- which(regexpr("^[#]include ", l) != -1) + if (length(w) > 0) { + l <- l[-w] + } + w <- which(regexpr("^[#]define R_STRICT_HEADERS", l) != -1) + if (length(w) > 0) { + l <- l[-w] + } + l <- c("#define R_STRICT_HEADERS", + "#include ", + l) + file.out <- file(f, "wb") + writeLines(l, file.out) + close(file.out) + } > > l <- readLines("R/RcppExports.R") > w <- which(regexpr("# Register entry points", l, fixed=TRUE) != -1) > if (length(w) >= 1) { + w <- w[1] + l <- l[seq(1, w-1)] + RcppExports.R <- file("R/RcppExports.R", "wb") + writeLines(l, RcppExports.R) + close(RcppExports.R) + } > > .in <- suppressWarnings(readLines("src/Makevars.in")) > .in <- gsub("@ARMA@", file.path(find.package("RcppArmadillo"),"include"), .in) > .in <- gsub("@BH@", file.path(find.package("BH"),"include"), .in) > .in <- gsub("@RCPP@", file.path(find.package("Rcpp"),"include"), .in) > .in <- gsub("@EG@", file.path(find.package("RcppEigen"),"include"), .in) > > .in <- gsub("@SL@", paste(capture.output(StanHeaders:::LdFlags()), capture.output(RcppParallel:::RcppParallelLibs())), #nolint + .in) > > > .badStan <- "" > .in <- gsub("@SH@", gsub("-I", "-@ISYSTEM@", + paste(capture.output(StanHeaders:::CxxFlags()), # nolint + capture.output(RcppParallel:::CxxFlags()), # nolint + paste0("-@ISYSTEM@'", system.file('include', 'src', package = 'StanHeaders', mustWork = TRUE), "'"), + .badStan)), + .in) > > > > > if (.Platform$OS.type == "windows" && !file.exists("src/Makevars.win")) { + .in <- gsub("@CXX14STD@", "-std=c++1y", .in) + file.out <- file("src/Makevars.win", "wb") + writeLines(gsub("@ISYSTEM@", "I", .in), + file.out) + close(file.out) + } else { + .in <- gsub("@CXX14STD@", "-std=gnu++14", .in) + file.out <- file("src/Makevars", "wb") + writeLines(gsub("@ISYSTEM@", "isystem", .in), + file.out) + close(file.out) + } > > if (file.exists("man/reexports.Rd")) { + l <- readLines("man/reexports.Rd") + if (!any(regexpr("[\\]value", l) != -1)) { + l <- c(l, "\\value{ Inherited from parent routine }") + file.out <- file("man/reexports.Rd", "wb") + writeLines(l, file.out) + close(file.out) + } + } > > > unlink("R/rxode2_md5.R") > > cpp <- list.files("src", pattern = ".(c|h|cpp|f)$") > include <- list.files("inst/include") > #Rfiles <- list.files("R/", pattern = ".R") > > cmd <- file.path(R.home("bin"), "R") > args <- c("CMD", "config") > > md5 <- digest::digest(c(lapply(c(paste0("src/", cpp), + paste0("inst/include/", include)#, + #paste0("R/", Rfiles) + ), digest::digest, file = TRUE), + ## vapply(c("BLAS_LIBS", "CC", "CFLAGS", "CPICFLAGS", + ## "CXX", "CXXFLAGS", "CXXPICFLAGS", + ## "CXX11", "CXX11STD", "CXX11FLAGS", "CXX11PICFLAGS", + ## "CXX14", "CXX14STD", "CXX14FLAGS", "CXX14PICFLAGS", + ## "CXX17", "CXX17STD", "CXX17FLAGS", "CXX17PICFLAGS", + ## "CXX20", "CXX20STD", "CXX20FLAGS", "CXX20PICFLAGS", + ## "FC", "FFLAGS", "FCFLAGS", "FPICFLAGS"), + ## function(cfg) { + ## rawToChar(sys::exec_internal(cmd, c(args, cfg))$stdout) + ## }, character(1) + ## ), + "" + )) > unlink("R/rxode2_md5.R") > md5file <- file("R/rxode2_md5.R", "wb") > writeLines(sprintf("rxode2.md5 <- \"%s\"\n", md5), md5file) > close(md5file) > > l <- readLines("DESCRIPTION") > w <- which(regexpr("Version[:] *(.*)$", l) != -1) > v <- gsub("Version[:] *(.*)$", "\\1", l[w]) > > unlink("inst/include/rxode2parseVer.h") > ode.h <- file("inst/include/rxode2parseVer.h", "wb") > writeLines(c(sprintf("#define __VER_md5__ \"%s\"", md5), + "#define __VER_repo__ \"https://github.com/nlmixr2/rxode2\"", + sprintf("#define __VER_ver__ \"%s\"", v)), + ode.h) > close(ode.h) > > unlink("src/sbuf.c") > l <- readLines("inst/include/sbuf.c") > sbuf.c <- file("src/sbuf.c", "wb") > writeLines(l, sbuf.c) > close(sbuf.c) > > > unlink("src/codegen2.h") > l <- readLines("inst/include/rxode2_model_shared.c") > > l <- l[l != ""] > l <- gsub(" *= *NULL;", "=NULL;", l) > > def <- l > w <- which(regexpr("double _prod", def) != -1) - 1 > def <- def[1:w] > def <- gsub("=NULL", "", def) > def <- gsub("[^ ]* *[*]?([^;]*);", "\\1", def) > > def <- unique(c(def, c("_sum", "_udf", "_sign", "_prod", "_max", "_min", "_transit4P", "_transit3P", "_assignFuns0", "_assignFuns", "_getRxSolve_", "_solveData", "_rxord", "__assignFuns2"))) > > w0 <- which(grepl("double +_prod", l))[1] > r <- 1:(w0 - 1) > l0 <- l[r] > l <- l[-r] > > > w1 <- which(regexpr("dynamic start", l) != -1) > l1 <- l[1:w1] > > > > w2 <- which(regexpr("dynamic stop", l) != -1) > l2 <- l[seq(w2, length(l))] > > w3 <- which(regexpr("assign start", l2) != -1) > > l3 <- l2[seq(w3, length(l2))] > l2 <- l2[1:w3] > > w4 <- which(regexpr("assign stop", l3) != -1) > l3 <- l3[seq(w4, length(l3))] > > dfP <- l[seq(w1+1, w2-1)] > > dfP <- dfP[regexpr("^ *$", dfP)==-1] > df <- setNames(do.call("rbind",lapply(seq_along(dfP), + function(i) { + .r <- sub("^ *", "", dfP[[i]]) + .r <- sub("^([^ ]*) *= *[(]", "\\1,", .r) + .r <- sub("^([^ ]*) *[)] *R_GetCCallable *[(] *\"", "\\1,", .r, perl=TRUE) + .r <- sub("^([^ ]*) *\" *, *\"", "\\1,", .r, perl=TRUE) + .r <- sub("^([^ ]*)\" *[)] *; *", "\\1",.r, perl=TRUE) + data.frame(t(strsplit(.r, ",")[[1]]),stringsAsFactors = FALSE) + })), c("fun", "type", "package", "packageFun")) > > df$rxFun <- df$fun > df$argMax <- df$argMin <- NA_integer_ > df$threadSafe <- 1L > df <- df[,c("rxFun", "fun", "type", "package", "packageFun", "argMin", "argMax", "threadSafe")] > df$rxFun <- gsub("_llik", "llik", df$rxFun) > > def <- def[!(def %in% df$rxFun)] > def <- def[!(def %in% df$fun)] > > .parseEnv <- new.env(parent=emptyenv()) > source("R/parseFuns.R") > > df$argMin <- vapply(df$rxFun, function(f) { + .n <- .parseEnv$.parseNum[f] + if (is.na(.n)) return(NA_integer_) + .n <-setNames(.n, NULL) + as.integer(.n) + }, integer(1), USE.NAMES=TRUE) > > df$argMax <- df$argMin > > dfStr <- deparse(df) > dfStr[1] <- paste(".parseEnv$.rxode2parseDf <- ", dfStr[1]) > > dfIni.R <- file("R/dfIni.R", "wb") > writeLines(dfStr, + dfIni.R) > close(dfIni.R) > > ## deparse1 came from R 4.0, use deparse2 > deparse2 <- function(expr, collapse = " ", width.cutoff = 500L, ...) { + paste(deparse(expr, width.cutoff, ...), collapse = collapse) + } > > final <- c("#include ", + "#include ", + "unsigned long int __timeId=0;", + "void writeHeader(const char *md5, const char *extra) {", + paste0("sAppend(&sbOut, \"#define ", def, " _rx%s%s%ld\\n\", extra, md5, __timeId++);"), + "}", + "void writeBody0(void) {", + paste0("sAppendN(&sbOut, ", vapply(paste0(l0, "\n"), deparse2, character(1)), ", ", nchar(l0) + 1, ");"), + "}", + "void writeBody1(void) {", + paste0("sAppendN(&sbOut, ", vapply(paste0(l1, "\n"), deparse2, character(1)), ", ", nchar(l1) + 1, ");"), + "}", + "void writeBody2(void) {", + paste0("sAppendN(&sbOut, ", vapply(paste0(l2, "\n"), deparse2, character(1)), ", ", nchar(l2) + 1, ");"), + "}", + "void writeBody3(void) {", + paste0("sAppendN(&sbOut, ", vapply(paste0(l3, "\n"), deparse2, character(1)), ", ", nchar(l3) + 1, ");"), + "}", + "void writeFooter(void) {", + paste0("sAppendN(&sbOut, \"#undef ", def, "\\n\", ", nchar(def) + 8, ");"), + "}" + ) > > codegen2.h <- file("src/codegen2.h", "wb") > writeLines(final, + codegen2.h) > close(codegen2.h) > > proc.time() user system elapsed 0.693 0.112 1.084 --------[begin src/Makevars]-------- # -*- mode: makefile-gmake -*- BH=/data/gannet/ripley/R/test-dev/BH/include RCPP=/data/gannet/ripley/R/test-dev/Rcpp/include EG=/data/gannet/ripley/R/test-dev/RcppEigen/include SH=-isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' CXX_STD = CXX17 ################################################################################ ## Package library flags. PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) -L'/data/gannet/ripley/R/test-dev/RcppParallel/lib/' -Wl,-rpath,'/data/gannet/ripley/R/test-dev/RcppParallel/lib/' -ltbb -ltbbmalloc # Release options PKG_CFLAGS = -D_isrxode2_ PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"$(BH)" -isystem"$(EG)" $(SH) -isystem"$(RCPP)" --------[end src/Makevars]-------- --------[begin R/RxODE_md5.R]-------- rxode2.md5 <- "dacf5f2bb5a77fc0f8265b72d72c5709" --------[end R/RxODE_md5.R]-------- ** libs using C compiler: ‘gcc-14 (GCC) 14.2.0’ using Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’ using C++ compiler: ‘g++-14 (GCC) 14.2.0’ using C++17 make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-f2008/rxode2/src' g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c approx.c -o approx.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c boost.cpp -o boost.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c box.c -o box.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c call_dvode.c -o call_dvode.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cbindThetaOmega.cpp -o cbindThetaOmega.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cfode.c -o cfode.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cfode_static.c -o cfode_static.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c checkmate.cpp -o checkmate.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c checkmate_stub.c -o checkmate_stub.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c codegen.c -o codegen.o codegen.c: In function 'codegen': codegen.c:344:19: warning: unused variable 'assignOne' [-Wunused-variable] 344 | int assignOne = 0; | ^~~~~~~~~ gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c common.c -o common.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c corfailure.c -o corfailure.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c correction.c -o correction.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cvPost.cpp -o cvPost.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c daxpy.c -o daxpy.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c ddot.c -o ddot.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dgefa.c -o dgefa.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dgesl.c -o dgesl.o gfortran-14 -fpic -g -O2 -mtune=native -std=f2018 -c dgpadm.f -o dgpadm.o gfortran-14 -fpic -g -O2 -mtune=native -std=f2018 -c dlsoda.f -o dlsoda.o dlsoda.f:110:72: 110 | DO 140 NQ = 2,12 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:123:72: 123 | DO 110 IB = 1,NQM1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:133:72: 133 | DO 120 I = 2,NQ | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:142:72: 142 | DO 130 I = 2,NQ | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:156:72: 156 | DO 230 NQ = 1,5 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:166:72: 166 | DO 210 IB = 1,NQ | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:173:72: 173 | DO 220 I = 1,NQP1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:257:72: 257 | DO 10 JJ = JJ1,NQ | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:262:72: 262 | DO 20 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:268:72: 268 | DO 50 JB = 1,JB2 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:274:72: 274 | DO 30 JJ = JJ1,J | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:279:72: 279 | DO 40 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:286:72: 286 | DO 60 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:388:72: 388 | DO 320 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:394:72: 394 | 330 DO 340 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:444:72: 444 | DO 15 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:450:72: 450 | DO 25 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:456:72: 456 | DO 35 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:462:72: 462 | DO 45 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:624:72: 624 | DO 10 I = 1,5 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:629:72: 629 | DO 20 I = 1,12 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:656:72: 656 | 150 DO 155 I = 1,L | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:695:72: 695 | DO 181 J = 2,L | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:697:72: 697 | DO 180 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:718:72: 718 | DO 215 JB = 1,NQ | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:721:72: 721 | DO 210 I = I1,NQNYH | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:736:72: 736 | DO 230 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:754:72: 754 | 250 DO 260 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:763:72: 763 | DO 290 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:769:72: 769 | DO 300 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:780:72: 780 | 350 DO 360 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:788:72: 788 | DO 380 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:842:72: 842 | DO 445 JB = 1,NQ | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:845:72: 845 | DO 440 I = I1,NQNYH | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:886:72: 886 | DO 461 J = 1,L | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:887:72: 887 | DO 460 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:998:72: 998 | DO 490 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1013:72: 1013 | DO 515 JB = 1,NQ | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1016:72: 1016 | DO 510 I = I1,NQNYH | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1038:72: 1038 | DO 530 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1074:72: 1074 | DO 600 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1109:72: 1109 | DO 645 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1115:72: 1115 | DO 650 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1138:72: 1138 | DO 710 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1221:72: 1221 | DO 110 I = 1,LENP | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1227:72: 1227 | DO 120 I = 1,LENP | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1238:72: 1238 | DO 230 J = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1244:72: 1244 | DO 220 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1258:72: 1258 | DO 250 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1276:72: 1276 | DO 410 I = 1,LENP | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1282:72: 1282 | DO 420 I = 1,LENP | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1298:72: 1298 | DO 560 J = 1,MBA | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1299:72: 1299 | DO 530 I = J,N,MBAND | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1306:72: 1306 | DO 550 JJ = J,N,MBAND | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1314:72: 1314 | DO 540 I = I1,I2 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1326:72: 1326 | DO 580 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1349:72: 1349 | DO 10 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1369:72: 1369 | DO 20 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1371:72: 1371 | DO 10 J = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1398:72: 1398 | DO 20 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:1403:72: 1403 | DO 10 J = JLO,JHI | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:2582:72: 2582 | DO 75 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:2596:72: 2596 | DO 95 I = I1,I2 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:2635:72: 2635 | DO 115 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:2643:72: 2643 | DO 120 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:2673:72: 2673 | DO 130 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:2679:72: 2679 | DO 150 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:2696:72: 2696 | DO 190 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:2759:72: 2759 | DO 260 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:2868:72: 2868 | 400 DO 410 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:2957:72: 2957 | DO 570 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:2965:72: 2965 | 580 DO 590 I = 1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:237:21: 237 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:363:21: 363 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:486:21: 486 | COMMON /DLS001/ CONIT, CRATE, EL(13), ELCO(13,12), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:493:21: 493 | COMMON /DLSA01/ ROWND2, CM1(12), CM2(5), PDEST, PDLAST, RATIO, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1163:21: 1163 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1169:21: 1169 | COMMON /DLSA01/ ROWND2, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1169:21: 1169 | COMMON /DLSA01/ ROWND2, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1169:21: 1169 | COMMON /DLSA01/ ROWND2, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1169:21: 1169 | COMMON /DLSA01/ ROWND2, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1169:21: 1169 | COMMON /DLSA01/ ROWND2, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1169:21: 1169 | COMMON /DLSA01/ ROWND2, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1169:21: 1169 | COMMON /DLSA01/ ROWND2, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1169:21: 1169 | COMMON /DLSA01/ ROWND2, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:1169:21: 1169 | COMMON /DLSA01/ ROWND2, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2436:21: 2436 | COMMON /DLSA01/ TSW, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2436:21: 2436 | COMMON /DLSA01/ TSW, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2436:21: 2436 | COMMON /DLSA01/ TSW, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2436:21: 2436 | COMMON /DLSA01/ TSW, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2436:21: 2436 | COMMON /DLSA01/ TSW, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2436:21: 2436 | COMMON /DLSA01/ TSW, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2436:21: 2436 | COMMON /DLSA01/ TSW, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2436:21: 2436 | COMMON /DLSA01/ TSW, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2436:21: 2436 | COMMON /DLSA01/ TSW, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2436:21: 2436 | COMMON /DLSA01/ TSW, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2436:21: 2436 | COMMON /DLSA01/ TSW, ROWNS2(20), PDNORM, | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) dlsoda.f:2429:21: 2429 | COMMON /DLS001/ ROWNS(209), | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dop853.c -o dop853.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dscal.c -o dscal.o gfortran-14 -fpic -g -O2 -mtune=native -std=f2018 -c dsphiv.f -o dsphiv.o dsphiv.f:216:72: 216 | do 200 j = 1,m | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c et.cpp -o et.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c etTran.cpp -o etTran.o etTran.cpp: In function 'Rcpp::List etTrans(Rcpp::List, const Rcpp::RObject&, bool, bool, bool, bool, Rcpp::Nullable >, Rcpp::CharacterVector, bool, bool, bool, Rcpp::Nullable >)': etTran.cpp:2521:34: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2521 | id.size() > (idxOut = idxOutput[iCur]) && | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ etTran.cpp:2524:40: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2524 | idxInput.size() > idxOut && | ~~~~~~~~~~~~~~~~^~~~~~~~ etTran.cpp:2532:41: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2532 | idxOutput.size() < iCur+1 && | ~~~~~~~~~~~~~~~~~^~~~~~~~ etTran.cpp:2533:34: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2533 | id.size() > (idxOut = idxOutput[iCur+1]) && | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ etTran.cpp:2536:40: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2536 | idxInput.size() > idxOut && | ~~~~~~~~~~~~~~~~^~~~~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c expandGrid.cpp -o expandGrid.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c expm.cpp -o expm.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fast_factor.cpp -o fast_factor.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c fnorm.c -o fnorm.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c forder.cpp -o forder.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c genModelVars.c -o genModelVars.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c getOption.c -o getOption.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c handle_evid.c -o handle_evid.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c idamax.c -o idamax.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c intdy.c -o intdy.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c isEt.c -o isEt.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lincmt.c -o lincmt.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lincmtB.cpp -o lincmtB.o In file included from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor.hpp:13, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun.hpp:201, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev.hpp:10, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math.hpp:19, from lincmtB.cpp:64: /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function 'void stan::math::internal::combination(std::vector&, const int&, const int&, const int&)': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:73:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 73 | for (std::size_t i = 0; i < p - 1; i++) { | ~~^~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:79:16: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'const int' [-Wsign-compare] 79 | } while (k < x); | ~~^~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function 'void stan::math::internal::combos(const int&, const double&, const int&, std::vector > >&)': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:102:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 102 | for (std::size_t i = 1; i != choose_dimk + 1; i++) { | ~~^~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:105:31: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'const int' [-Wsign-compare] 105 | for (std::size_t j = 0; j != k; j++) { | ~~^~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function 'void stan::math::internal::increment(std::vector&, const int&, const double&, const std::vector&, std::vector >&)': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:126:31: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'const int' [-Wsign-compare] 126 | for (std::size_t j = 0; j != k; j++) { | ~~^~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:132:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 132 | while ((first_zero < index.size()) && index[first_zero]) { | ~~~~~~~~~~~^~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:135:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 135 | if (first_zero == index.size()) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:143:31: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 143 | for (std::size_t i = 0; i != first_zero + 1; i++) { | ~~^~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function 'void stan::math::internal::signcombos(const int&, const double&, const int&, std::vector > >&)': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:168:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 168 | for (std::size_t i = 1; i != choose_dimk + 1; i++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_ccdf_log.hpp:5, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob.hpp:240, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim.hpp:16, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev.hpp:14: /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lccdf.hpp: In function 'stan::return_type_t stan::math::normal_lccdf(const T_y&, const T_loc&, const T_scale&)': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lccdf.hpp:68: note: '-Wmisleading-indentation' is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers 68 | } else if (scaled_diff > 8.25 * INV_SQRT_TWO) { /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/prob/normal_lccdf.hpp:68: note: adding '-flarge-source-files' will allow for more column-tracking support, at the expense of compilation time and memory In file included from lincmtB.cpp:108: ../inst/include/rxode2parseGetTime.h: In function 'int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)': ../inst/include/rxode2parseGetTime.h:223: warning: unused variable 'curEvid' [-Wunused-variable] 223 | int curEvid = getEvid(ind, ind->idose[*endIdx+1]); In file included from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:5, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_2F1_converges.hpp:5, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err.hpp:4, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core/profiling.hpp:9, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/core.hpp:53, from /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev.hpp:8: /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of 'void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* = 0]': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from 'void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]' 29 | elementwise_check([](double x) { return std::isfinite(x); }, function, name, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | y, "finite"); | ~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 35 | check_finite("hypergeometric_pFq", "a", a_ref); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from 'auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector >; Tb = std::vector >; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]' 125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from 'auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]' 148 | return hypergeometric_3F2(std::vector(a), std::vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37: required from here 77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase >::Index' {aka 'long int'} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of 'void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* = 0]': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from 'void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]' 28 | elementwise_check([](double x) { return !std::isnan(x); }, function, name, y, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 | "not nan"); | ~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 39 | check_not_nan("hypergeometric_pFq", "a", a_ref); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from 'auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector >; Tb = std::vector >; Tz = double; stan::require_all_vector_t* = 0; stan::require_stan_scalar_t* = 0]' 125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from 'auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t* = 0]' 148 | return hypergeometric_3F2(std::vector(a), std::vector(b), z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37: required from here 77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w)) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase >::Index' {aka 'long int'} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of 'void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* = 0]': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from 'void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]' 29 | elementwise_check([](double x) { return std::isfinite(x); }, function, name, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | y, "finite"); | ~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 35 | check_finite("hypergeometric_pFq", "a", a_ref); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from 'stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]' 189 | return hypergeometric_pFq(a_args, b_args, z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from 'TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]' 190 | auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from 'auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]' 306 | return internal::grad_2F1_impl(a1, a2, b1, z, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 307 | precision, max_steps); | ~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here 37 | = grad_2F1(a + b, 1.0, a + 1, z); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase >::Index' {aka 'long int'} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of 'void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* = 0]': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from 'void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]' 29 | elementwise_check([](double x) { return std::isfinite(x); }, function, name, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | y, "finite"); | ~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:36:15: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 36 | check_finite("hypergeometric_pFq", "b", b_ref); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from 'stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]' 189 | return hypergeometric_pFq(a_args, b_args, z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from 'TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]' 190 | auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from 'auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]' 306 | return internal::grad_2F1_impl(a1, a2, b1, z, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 307 | precision, max_steps); | ~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here 37 | = grad_2F1(a + b, 1.0, a + 1, z); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase >::Index' {aka 'long int'} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of 'void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* = 0]': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from 'void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]' 28 | elementwise_check([](double x) { return !std::isnan(x); }, function, name, y, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 | "not nan"); | ~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 39 | check_not_nan("hypergeometric_pFq", "a", a_ref); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from 'stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]' 189 | return hypergeometric_pFq(a_args, b_args, z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from 'TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]' 190 | auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from 'auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]' 306 | return internal::grad_2F1_impl(a1, a2, b1, z, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 307 | precision, max_steps); | ~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here 37 | = grad_2F1(a + b, 1.0, a + 1, z); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase >::Index' {aka 'long int'} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of 'void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan >(const char*, const char*, const Eigen::Matrix&)::; T = Eigen::Matrix; Indexings = {}; stan::require_eigen_t* = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* = 0]': /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from 'void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix]' 28 | elementwise_check([](double x) { return !std::isnan(x); }, function, name, y, | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 | "not nan"); | ~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:40:16: required from 'stan::return_type_t stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix; Tb = Eigen::Matrix; Tz = double; stan::require_all_eigen_st* = 0; stan::require_arithmetic_t* = 0; stan::return_type_t = double]' 40 | check_not_nan("hypergeometric_pFq", "b", b_ref); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from 'stan::return_type_t stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional; stan::require_all_arithmetic_t* = 0; stan::return_type_t = double]' 189 | return hypergeometric_pFq(a_args, b_args, z); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from 'TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple]' 190 | auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from 'auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t >* = 0]' 306 | return internal::grad_2F1_impl(a1, a2, b1, z, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 307 | precision, max_steps); | ~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here 37 | = grad_2F1(a + b, 1.0, a + 1, z); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /data/gannet/ripley/R/test-dev/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Eigen::EigenBase >::Index' {aka 'long int'} [-Wsign-compare] 153 | for (size_t i = 0; i < x.size(); i++) { | ~~^~~~~~~~~~ In function 'double handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)', inlined from 'double getTime__(int, rx_solving_options_ind*, int)' at ../inst/include/rxode2parseGetTime.h:381: ../inst/include/rxode2parseGetTime.h:314: warning: 'infBidx' may be used uninitialized [-Wmaybe-uninitialized] 314 | if (infBidx == -1) return 0.0; ../inst/include/rxode2parseGetTime.h: In function 'double getTime__(int, rx_solving_options_ind*, int)': ../inst/include/rxode2parseGetTime.h:312: note: 'infBidx' was declared here 312 | int infBidx; gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lsoda.c -o lsoda.o gfortran-14 -fpic -g -O2 -mtune=native -std=f2018 -c matexp.f -o matexp.o matexp.f:223:72: 223 | DO 20, J = 1, N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:224:72: 224 | DO 10, I = 1, M | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:229:72: 229 | DO 40, J = 1, N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:230:72: 230 | DO 30, I = 1, M | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:245:72: 245 | DO 90, J = 1, N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:247:72: 247 | DO 50, I = 1, M | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:251:72: 251 | DO 60, I = 1, M | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:255:72: 255 | DO 80, L = 1, K | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:258:72: 258 | DO 70, I = 1, M | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:268:72: 268 | DO 120, J = 1, N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:269:72: 269 | DO 110, I = 1, M | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:271:72: 271 | DO 100, L = 1, K | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:287:72: 287 | DO 170, J = 1, N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:289:72: 289 | DO 130, I = 1, M | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:293:72: 293 | DO 140, I = 1, M | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:297:72: 297 | DO 160, L = 1, K | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:300:72: 300 | DO 150, I = 1, M | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:310:72: 310 | DO 200, J = 1, N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:311:72: 311 | DO 190, I = 1, M | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) matexp.f:313:72: 313 | DO 180, L = 1, K | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c matexp_HM98.c -o matexp_HM98.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c methodswitch.c -o methodswitch.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c nearPD.cpp -o nearPD.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c omegaChol.c -o omegaChol.o gfortran-14 -fpic -g -O2 -mtune=native -std=f2018 -c opkda2.f -o opkda2.o opkda2.f:72:72: 72 | DO 60 K = 1, NM1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:99:72: 99 | DO 30 J = KP1, N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:200:72: 200 | DO 20 K = 1, NM1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:213:72: 213 | DO 40 KB = 1, N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:225:72: 225 | DO 60 K = 1, N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:233:72: 233 | DO 80 KB = 1, NM1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:357:72: 357 | DO 20 JZ = J0, J1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:359:72: 359 | DO 10 I = I0, ML | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:371:72: 371 | DO 120 K = 1, NM1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:379:72: 379 | DO 40 I = 1, ML | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:412:72: 412 | DO 80 J = KP1, JU | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:525:72: 525 | DO 20 K = 1, NM1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:539:72: 539 | DO 40 KB = 1, N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:554:72: 554 | DO 60 K = 1, N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) opkda2.f:566:72: 566 | DO 80 KB = 1, NM1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c orderswitch.c -o orderswitch.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c par_solve.cpp -o par_solve.o In file included from par_solve.cpp:15: ../inst/include/rxode2parseGetTime.h: In function 'int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)': ../inst/include/rxode2parseGetTime.h:223:9: warning: unused variable 'curEvid' [-Wunused-variable] 223 | int curEvid = getEvid(ind, ind->idose[*endIdx+1]); | ^~~~~~~ par_solve.cpp: In function 'void handleSS(int*, int*, double*, double*, double*, double, double, int, int*, int, int*, rx_solving_options*, rx_solving_options_ind*, t_update_inis, void*)': par_solve.cpp:1317:39: warning: variable 'oldI' set but not used [-Wunused-but-set-variable] 1317 | ei=0, wh, cmt, wh100, whI, wh0, oldI, | ^~~~ ../inst/include/rxode2parseGetTime.h: In function 'double handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)': ../inst/include/rxode2parseGetTime.h:314:5: warning: 'infBidx' may be used uninitialized [-Wmaybe-uninitialized] 314 | if (infBidx == -1) return 0.0; | ^~ ../inst/include/rxode2parseGetTime.h:312:9: note: 'infBidx' was declared here 312 | int infBidx; | ^~~~~~~ par_solve.cpp: In function 'void solveWith1Pt(int*, int*, double*, double*, double*, double, double, int, int*, int, int*, rx_solving_options*, rx_solving_options_ind*, t_update_inis, void*)': par_solve.cpp:708:5: warning: 'idid' may be used uninitialized [-Wmaybe-uninitialized] 708 | if (idid <= 0) { | ^~ par_solve.cpp:701:7: note: 'idid' was declared here 701 | int idid, itol=0; | ^~~~ gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c parseLinCmt.c -o parseLinCmt.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c print_node.c -o print_node.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c prja.c -o prja.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c qs.cpp -o qs.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rprintf.c -o rprintf.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rx2api.c -o rx2api.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rxData.cpp -o rxData.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rxInv.cpp -o rxInv.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rxOptRep.cpp -o rxOptRep.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rxStack.cpp -o rxStack.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rxode2_df.cpp -o rxode2_df.o In file included from rxode2_df.cpp:36: ../inst/include/rxode2parseGetTime.h: In function 'int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)': ../inst/include/rxode2parseGetTime.h:223:9: warning: unused variable 'curEvid' [-Wunused-variable] 223 | int curEvid = getEvid(ind, ind->idose[*endIdx+1]); | ^~~~~~~ In function 'double handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)', inlined from 'double getTime__(int, rx_solving_options_ind*, int)' at ../inst/include/rxode2parseGetTime.h:381:34: ../inst/include/rxode2parseGetTime.h:314:5: warning: 'infBidx' may be used uninitialized [-Wmaybe-uninitialized] 314 | if (infBidx == -1) return 0.0; | ^~ ../inst/include/rxode2parseGetTime.h: In function 'double getTime__(int, rx_solving_options_ind*, int)': ../inst/include/rxode2parseGetTime.h:312:9: note: 'infBidx' was declared here 312 | int infBidx; | ^~~~~~~ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rxthreefry.cpp -o rxthreefry.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sbuf.c -o sbuf.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c scaleh.c -o scaleh.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c seed.cpp -o seed.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c solsy.c -o solsy.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c stoda.c -o stoda.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c strdup_printf.c -o strdup_printf.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c strncmp.c -o strncmp.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c strncmpi.c -o strncmpi.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tran.c -o tran.o In file included from parseFuns.h:151, from tran.c:151: parseFunsDosing.h: In function 'handleFunctionTad': parseFunsDosing.h:86:61: warning: value computed is not used [-Wunused-value] 86 | handleFunctionTadEmptyCcode(tf, v2) || | ^~ In file included from tran.c:155: parseAssignStr.h: In function 'handleStrAssign': parseAssignStr.h:129:13: warning: unused variable 'buf' [-Wunused-variable] 129 | char *buf = tb.str.line[tb.id]; | ^~~ In file included from tran.c:156: parseLevels.h: In function 'handleLevelsStr1': parseLevels.h:94:11: warning: unused variable 'n' [-Wunused-variable] 94 | int n = get_str_assign_int(tb.id, v); | ^ g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c udf.cpp -o udf.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c utilc.c -o utilc.o g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/data/gannet/ripley/R/test-dev/BH/include" -isystem"/data/gannet/ripley/R/test-dev/RcppEigen/include" -isystem'/data/gannet/ripley/R/test-dev/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/data/gannet/ripley/R/test-dev/StanHeaders/include/src' -isystem"/data/gannet/ripley/R/test-dev/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utilcpp.cpp -o utilcpp.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/sitmo/include' -I'/data/gannet/ripley/R/test-dev/lotri/include' -I'/data/gannet/ripley/R/test-dev/PreciseSums/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/StanHeaders/include' -I'/data/gannet/ripley/R/test-dev/dparser/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c vmnorm.c -o vmnorm.o g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o rxode2.so RcppExports.o approx.o boost.o box.o call_dvode.o cbindThetaOmega.o cfode.o cfode_static.o checkmate.o checkmate_stub.o codegen.o common.o corfailure.o correction.o cvPost.o daxpy.o ddot.o dgefa.o dgesl.o dgpadm.o dlsoda.o dop853.o dscal.o dsphiv.o et.o etTran.o expandGrid.o expm.o fast_factor.o fnorm.o forder.o genModelVars.o getOption.o handle_evid.o idamax.o init.o intdy.o isEt.o lincmt.o lincmtB.o lsoda.o matexp.o matexp_HM98.o methodswitch.o nearPD.o omegaChol.o opkda2.o orderswitch.o par_solve.o parseLinCmt.o print_node.o prja.o qs.o rprintf.o rx2api.o rxData.o rxInv.o rxOptRep.o rxStack.o rxode2_df.o rxthreefry.o sbuf.o scaleh.o seed.o solsy.o stoda.o strdup_printf.o strncmp.o strncmpi.o tran.o udf.o utilc.o utilcpp.o vmnorm.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/data/gannet/ripley/R/test-dev/RcppParallel/lib/ -Wl,-rpath,/data/gannet/ripley/R/test-dev/RcppParallel/lib/ -ltbb -ltbbmalloc -lgfortran -lm -lquadmath make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-f2008/rxode2/src' installing via 'install.libs.R' to /data/gannet/ripley/R/packages/tests-f2008/Libs/rxode2-lib/00LOCK-rxode2/00new/rxode2 ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rxode2) Time 9:08.78, 491.98 + 28.35