* installing *source* package ‘gap’ ... ** package ‘gap’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (GCC) 14.2.0’ using Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’ make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-f2008/gap/src' gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c 2k.c -o 2k.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c 2ld.c -o 2ld.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cline.c -o cline.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c gcontrol_c.c -o gcontrol_c.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c gcx.c -o gcx.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c gif_c.c -o gif_c.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c hap_c.c -o hap_c.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c hwe.hardy.c -o hwe.hardy.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c kin.morgan.c -o kin.morgan.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c makeped_c.c -o makeped_c.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mia.c -o mia.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c muvar.c -o muvar.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c package_native_routine_registration_skeleton.c -o package_native_routine_registration_skeleton.o gfortran-14 -fpic -g -O2 -mtune=native -std=f2018 -c pfc.f -o pfc.o pfc.f:18:72: 18 | equivalence (fac(1),fac0(2)) | 1 Warning: Fortran 2018 obsolescent feature: EQUIVALENCE statement at (1) pfc.f:25:72: 25 | do 1 j=1,maxfac | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:35:72: 35 | do 20 i=1,famsize | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:79:72: 79 | equivalence (fac(1),fac0(2)) | 1 Warning: Fortran 2018 obsolescent feature: EQUIVALENCE statement at (1) pfc.f:91:72: 91 | do 10 j=1,ns | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:100:72: 100 | do 100 j=first,last | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:104:72: 104 | do 80 i=1,j+1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:110:72: 110 | do 30 ib=1,j | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:186:72: 186 | do 20 j=1,maxsize | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:250:72: 250 | equivalence (fac(1),fac0(2)) | 1 Warning: Fortran 2018 obsolescent feature: EQUIVALENCE statement at (1) pfc.f:258:72: 258 | do 20 j=first,last | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:260:72: 260 | do 10 i=1,j+1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:283:72: 283 | equivalence (fac(1),fac0(2)) | 1 Warning: Fortran 2018 obsolescent feature: EQUIVALENCE statement at (1) pfc.f:289:72: 289 | do 20 j=first,last | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:290:72: 290 | do 10 i=1,j+1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:319:72: 319 | do 30 j=first,last | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:323:72: 323 | do 20 i=1,j+1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:334:72: 334 | do 50 j=first,last | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:371:72: 371 | do 2 j=1,i | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:380:72: 380 | do 4 j=1,ip1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:390:72: 390 | do 6 j=1,ip1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:402:72: 402 | do 20 k=1,ip1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:417:72: 417 | do 40 k=3,ip1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:447:72: 447 | equivalence (fac(1),fac0(2)) | 1 Warning: Fortran 2018 obsolescent feature: EQUIVALENCE statement at (1) pfc.f:460:72: 460 | do 10 j=1,maxsize | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:488:72: 488 | do 10 j=1,k | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:501:72: 501 | do 200 i=j,k | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:516:72: 516 | 500 do 600 i=1,k | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.f:19:20: 19 | common/factab/fac0 | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) pfc.f:20:21: 20 | common /jhzhao/psum,ptail,dcase | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) pfc.f:20:21: 20 | common /jhzhao/psum,ptail,dcase | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) pfc.f:20:21: 20 | common /jhzhao/psum,ptail,dcase | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) pfc.f:251:20: 251 | common/factab/fac0 | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) pfc.f:284:20: 284 | common/factab/fac0 | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) pfc.f:80:20: 80 | common/factab/fac0 | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) pfc.f:170:21: 170 | common /jhzhao/psum,ptail,dcase | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) pfc.f:170:21: 170 | common /jhzhao/psum,ptail,dcase | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) pfc.f:170:21: 170 | common /jhzhao/psum,ptail,dcase | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) pfc.f:448:20: 448 | common/factab/fac0 | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) gfortran-14 -fpic -g -O2 -mtune=native -std=f2018 -c pfc.sim.f -o pfc.sim.o pfc.sim.f:22:72: 22 | equivalence (fac(1),fac0(2)) | 1 Warning: Fortran 2018 obsolescent feature: EQUIVALENCE statement at (1) pfc.sim.f:34:72: 34 | do 1 j=1, maxfac | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:48:72: 48 | do 200 j=1,10000000 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:49:72: 49 | do 20 i=1,famsize | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:80:72: 80 | do 51 c=1,ncycle | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:82:72: 82 | do 50 i=1,nsim | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:151:72: 151 | do 50 j=1,20 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:152:72: 152 | do 5 i=1,20 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:157:72: 157 | do 10 i=1,nsibs | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:169:72: 169 | do 20 j=minsize,maxsize | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:170:72: 170 | do 30 i=1,m(j) | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:172:72: 172 | do 40 k=1,j | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:208:72: 208 | equivalence (fac(1),fac0(2)) | 1 Warning: Fortran 2018 obsolescent feature: EQUIVALENCE statement at (1) pfc.sim.f:217:72: 217 | do 20 j=first,last | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:219:72: 219 | do 10 i=1,j+1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:290:72: 290 | equivalence (fac(1),fac0(2)) | 1 Warning: Fortran 2018 obsolescent feature: EQUIVALENCE statement at (1) pfc.sim.f:298:72: 298 | do 20 j=first,last | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:300:72: 300 | do 10 i=1,j+1 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:337:72: 337 | DO 200 I=J,K | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:353:72: 353 | 500 DO 600 I=1,K | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:452:72: 452 | DO 2 I=1,17 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:550:72: 550 | EQUIVALENCE (IMACH(4),OUTPUT) | 1 Warning: Fortran 2018 obsolescent feature: EQUIVALENCE statement at (1) pfc.sim.f:1271:72: 1271 | DO 20 KUNIT=1,NUNIT | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:1274:72: 1274 | DO 10 ICHAR=1,LENMES,72 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:1535:72: 1535 | DO 60 KUNIT=1,NUNIT | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:1543:72: 1543 | DO 20 I=1,10 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:1557:72: 1557 | DO 70 I=1,10 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:1567:72: 1567 | DO 90 I=1,10 | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:1631:72: 1631 | DO 30 I=1,N | 1 Warning: Fortran 2018 obsolescent feature: Labeled DO statement at (1) pfc.sim.f:23:20: 23 | common/factab/fac0 | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) pfc.sim.f:209:20: 209 | common/factab/fac0 | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) pfc.sim.f:291:20: 291 | common/factab/fac0 | 1 Warning: Fortran 2018 obsolescent feature: COMMON block at (1) gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c pgc_c.c -o pgc_c.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c whscore.c -o whscore.o gcc-14 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o gap.so 2k.o 2ld.o cline.o gcontrol_c.o gcx.o gif_c.o hap_c.o hwe.hardy.o kin.morgan.o makeped_c.o mia.o muvar.o package_native_routine_registration_skeleton.o pfc.o pfc.sim.o pgc_c.o whscore.o -lgfortran -lm -lquadmath make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-f2008/gap/src' installing to /data/gannet/ripley/R/packages/tests-f2008/Libs/gap-lib/00LOCK-gap/00new/gap/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gap) Time 0:48.90, 40.22 + 2.17