* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/tmhmm.Rcheck’ * using R Under development (unstable) (2021-06-19 r80532) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘tmhmm/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘tmhmm’ version ‘1.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘tmhmm’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking examples with --run-donttest ... ERROR Running examples in ‘tmhmm-Ex.R’ failed The error most likely occurred in: > ### Name: install_tmhmm > ### Title: Install NetMHC2pan to a local folder > ### Aliases: install_tmhmm > > ### ** Examples > > ## No test: > install_tmhmm() trying URL 'https://services.healthtech.dtu.dk/download/98a1be17-577e-4cb0-8f65-f787a4591064/tmhmm-2.0c.Linux.tar.gz' Error in value[[3L]](cond) : 'download_url' is invalid. URL:https://services.healthtech.dtu.dk/download/98a1be17-577e-4cb0-8f65-f787a4591064 Request a download URL at the TMHMM request page at https://services.healthtech.dtu.dk/service.php?TMHMM-2.0/ Full error message: cannot open URL 'https://services.healthtech.dtu.dk/download/98a1be17-577e-4cb0-8f65-f787a4591064/tmhmm-2.0c.Linux.tar.gz' Calls: install_tmhmm ... tryCatch -> tryCatchList -> tryCatchOne -> Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/blackswan/ripley/R/packages/tests-devel/tmhmm.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 0:19.27, 15.25 + 3.45