* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/stepgbm.Rcheck’ * using R Under development (unstable) (2023-03-24 r84037) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2) GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2) * running under: Fedora 34 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘stepgbm/DESCRIPTION’ ... OK * this is package ‘stepgbm’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘stepgbm’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘gbm’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking examples with --run-donttest ... ERROR Running examples in ‘stepgbm-Ex.R’ failed The error most likely occurred in: > ### Name: stepgbm > ### Title: Select predictive variables for generalized boosted regression > ### modeling (gbm) by various variable influence methods and predictive > ### accuracy in a stepwise algorithm > ### Aliases: stepgbm > > ### ** Examples > > ## No test: > library(spm) > > data(petrel) > stepgbm1 <- stepgbm(trainx = petrel[, c(1,2, 6:9)], trainy = + log(petrel[, 5] + 1), method = "KIRVI", family = "gaussian", rpt = 2, + predacc = "VEcv", cv.fold = 5, min.n.var = 2, + n.cores = 6, delta.predacc = 0.01, rseed = 1234) Error in .check_ncores(length(names)) : 6 simultaneous processes spawned Calls: stepgbm ... gbmCluster -> -> makePSOCKcluster -> .check_ncores Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘stepgbmRVI_test.R’ Running ‘stepgbm_test.R’ OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/blackswan/ripley/R/packages/tests-devel/stepgbm.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 0:18.09, 13.53 + 4.35