* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/spm2.Rcheck’ * using R Under development (unstable) (2023-01-26 r83699) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2) GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2) * running under: Fedora 34 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘spm2/DESCRIPTION’ ... OK * this is package ‘spm2’ version ‘1.1.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘spm2’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: ‘MASS’ ‘psy’ ‘ranger’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking examples with --run-donttest ... ERROR Running examples in ‘spm2-Ex.R’ failed The error most likely occurred in: > ### Name: gbmkrigeidwcv > ### Title: Cross validation, n-fold and leave-one-out for the hybrid > ### methods of generalized boosted regression modeling ('gbm'), 'kriging' > ### and inverse distance weighted ('IDW'). > ### Aliases: gbmkrigeidwcv > > ### ** Examples > > > ## No test: > library(spm) > # gbmgbmokgbmidw > data(sponge) > longlat <- sponge[, 1:2] > set.seed(1234) > gbmgbmkrigegbmidwcv1 <- gbmkrigeidwcv(longlat = longlat, + trainx = sponge[, -3], trainy = sponge[, 3], family = "poisson", interaction.depth = 3, + transformation = "none", formula = res1 ~ 1, vgm.args = "Sph", + nmaxkrige = 12, idp = 2, nmaxidw = 12, hybrid.parameter = 3, validation = "CV", + predacc = "ALL", n.cores = 8) Error in .check_ncores(length(names)) : 8 simultaneous processes spawned Calls: gbmkrigeidwcv ... gbmCluster -> -> makePSOCKcluster -> .check_ncores Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/blackswan/ripley/R/packages/tests-devel/spm2.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 0:33.99, 29.24 + 4.34