* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/sleepwalk.Rcheck’ * using R Under development (unstable) (2024-03-25 r86192) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4) GNU Fortran (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4) * running under: Fedora Linux 38 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘sleepwalk/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘sleepwalk’ version ‘0.3.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘sleepwalk’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking examples with --run-donttest ... [1s/16s] ERROR Running examples in ‘sleepwalk-Ex.R’ failed The error most likely occurred in: > ### Name: sleepwalk > ### Title: Interactively explore one or several 2D embeddings > ### Aliases: sleepwalk > > ### ** Examples > > #generate cockscrew-shaped 3D data with 3 additional noisy dimensions > ts <- c(rnorm(100), rnorm(200, 5), rnorm(150, 13), runif(200, min = -5, max = 20)) > > a <- 3 > w <- 1 > > points <- cbind(30*cos(w * ts), 30*sin(w * ts), a * ts) > > ndim <- 6 > noise <- cbind(matrix(rnorm(length(ts) * 3, sd = 5), ncol = 3), + matrix(rnorm(length(ts) * (ndim - 3), sd = 10), ncol = ndim - 3)) > > data <- noise > data[, 1:3] <- data[, 1:3] + points > > pca <- prcomp(data) > > ## No test: > #compare Euclidean distance with the real position on the helix > sleepwalk(list(pca$x[, 1:2], pca$x[, 1:2]), list(data, as.matrix(ts)), + compare = "distances", pointSize = 3) Estimating 'maxdist' for feature matrix 1 Estimating 'maxdist' for feature matrix 2 Server has been stopped. Error in app$openPage(useViewer, browser) : Timeout waiting for WebSocket. Calls: sleepwalk -> -> Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/blackswan/ripley/R/packages/tests-devel/sleepwalk.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 0:51.18, 30.79 + 5.31