* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/sephora.Rcheck’ * using R Under development (unstable) (2026-01-15 r89304) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘sephora/DESCRIPTION’ ... OK * this is package ‘sephora’ version ‘0.1.31’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... INFO Package suggested but not available for checking: ‘TSclust’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘sephora’ can be installed ... [43s/44s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [12s/12s] OK * checking whether the package can be loaded with stated dependencies ... [12s/12s] OK * checking whether the package can be unloaded cleanly ... [12s/12s] OK * checking whether the namespace can be loaded with stated dependencies ... [11s/11s] OK * checking whether the namespace can be unloaded cleanly ... [11s/12s] OK * checking loading without being on the library search path ... [11s/11s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [47s/48s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [14s/15s] OK * checking examples with --run-donttest ... [14s/26s] ERROR Running examples in ‘sephora-Ex.R’ failed The error most likely occurred in: > ### Name: phenopar_polygon > ### Title: Phenological parameters estimation in mass > ### Aliases: phenopar_polygon > > ### ** Examples > > ## No test: > dirOUTPUT <- system.file("data", package = "sephora") > BASIS <- drbasis(n=100, q=2) > > polygon_deciduous <- deciduous_polygon > for(i in 1:nrow(polygon_deciduous)){ + polygon_deciduous[i,] <- vecFromData(data=deciduous_polygon, numRow=i)$vec + } > > # --- In the following example 'numCores=2' for CRAN > # --- testing purposes only. In a real life example > # --- users are encouraged to set 'numCores' to a number > # --- that reflects the size of their data set as well > # --- as the number of available cores > > phenopar_polygon(data=polygon_deciduous, + product="independent", + numFreq = 3, distance = "dtw2", + samples=100, basis=BASIS, + k=3, numCores=2, + dirToSave=dirOUTPUT, + outputFileBaseName = "deciduous") starting worker pid=671389 on localhost:11350 at 08:59:59.891 starting worker pid=671388 on localhost:11350 at 08:59:59.891 Loading required package: sephora Loading required package: ggplot2 Loading required package: geoTS Loading required package: raster Loading required package: sp Loading required package: eBsc Loading required package: rootSolve loaded sephora and set parent environment Loading required package: proxy Attaching package: ‘proxy’ The following object is masked from ‘package:raster’: as.matrix The following objects are masked from ‘package:stats’: as.dist, dist The following object is masked from ‘package:base’: as.matrix Loading required package: dtw Loaded dtw v1.23-1. See ?dtw for help, citation("dtw") for use in publication. dtwclust: Setting random number generator to L'Ecuyer-CMRG (see RNGkind()). To read the included vignettes type: browseVignettes("dtwclust"). See news(package = "dtwclust") after package updates. Loading required package: sephora Loading required package: ggplot2 Loading required package: geoTS Loading required package: raster Loading required package: sp Loading required package: eBsc Loading required package: rootSolve loaded sephora and set parent environment Loading required package: proxy Attaching package: ‘proxy’ The following object is masked from ‘package:raster’: as.matrix The following objects are masked from ‘package:stats’: as.dist, dist The following object is masked from ‘package:base’: as.matrix Loading required package: dtw Loaded dtw v1.23-1. See ?dtw for help, citation("dtw") for use in publication. dtwclust: Setting random number generator to L'Ecuyer-CMRG (see RNGkind()). To read the included vignettes type: browseVignettes("dtwclust"). See news(package = "dtwclust") after package updates. Error in e$fun(obj, substitute(ex), parent.frame(), e$data) : worker initialization failed: there is no package called ‘TSclust’ Calls: phenopar_polygon ... phenopar_polygon_auxiliar -> %dopar% -> Execution halted Error in unserialize(node$con) : error reading from connection Calls: ... doTryCatch -> recvData -> recvData.SOCKnodError in unserialize(node$con) : error reading from connection Calls: ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize e -> unserialize Execution halted Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/blackswan/ripley/R/packages/tests-devel/sephora.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 5:50.43, 294.33 + 37.28