* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/selectSNPs.Rcheck’
* using R Under development (unstable) (2020-03-29 r78100)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘selectSNPs/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘selectSNPs’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘selectSNPs’ can be installed ... [11s/11s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘selectSNPs-Ex.R’ failed
The error most likely occurred in:

> ### Name: selectLocalOptimalSNPs
> ### Title: Select locally-optimized SNPs on one or more chromosomes
> ### Aliases: selectLocalOptimalSNPs selectLocalOptimalSNPs,numeric-method
> ###   selectLocalOptimalSNPs,Chrom-method selectLocalOptimalSNPs,Map-method
> 
> ### ** Examples
> 
> ## No test: 
> data(bov80K)
> map1<-selectLocalOptimalSNPs(bov80K,bin=1,n=1000,w1=0,w2=1)
Error in .local(object, ...) : unused argument (bin = 1)
Calls: selectLocalOptimalSNPs -> selectLocalOptimalSNPs
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [33s/33s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/selectSNPs.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:09.47, 64.59 + 4.03