* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/rplum.Rcheck’ * using R Under development (unstable) (2025-04-24 r88177) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘rplum/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘rplum’ version ‘0.5.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rplum’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [12s/12s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking examples with --run-donttest ... [20s/20s] ERROR Running examples in ‘rplum-Ex.R’ failed The error most likely occurred in: > ### Name: Plum > ### Title: Main 210Pb age-depth modelling function > ### Aliases: Plum > > ### ** Examples > > ## No test: > Plum(ask=FALSE, ssize=1000, coredir=tempfile(), date.sample=2018.5, ra.case=0, n.supp=3) The run's files will be put in this folder: /tmp/RtmpluaT2l/working_dir/Rtmp2BK9EE/file2628537ccb29cd/HP1C 1Reading /tmp/RtmpluaT2l/working_dir/Rtmp2BK9EE/file2628537ccb29cd/HP1C/HP1C.csv No radium-226 data, setting ra.case to 0 Using for number of supported data: 3 Writing changes to /tmp/RtmpluaT2l/working_dir/Rtmp2BK9EE/file2628537ccb29cd/HP1C/HP1C.csv Prior for acc.mean set at 10 yr/cm, ballpark estimate 5.9 yr/cm Will run around 4080000 iterations and store around 3566 Reading /tmp/RtmpluaT2l/working_dir/Rtmp2BK9EE/file2628537ccb29cd/HP1C/HP1C_36.bacon Constant calibration curve. IntCal20: Reading from file: /data/blackswan/ripley/R/R-devel/site-library/rintcal/extdata/3Col_intcal20.14C Marine20: Reading from file: /data/blackswan/ripley/R/R-devel/site-library/rintcal/extdata/3Col_marine20.14C SHCal20: Reading from file: /data/blackswan/ripley/R/R-devel/site-library/rintcal/extdata/3Col_shcal20.14C Constant calibration curve. Calibration 'curve' used to handle 210Pb data (Plum). Supported data file /tmp/RtmpluaT2l/working_dir/Rtmp2BK9EE/file2628537ccb29cd/HP1C/HP1C_36.plum Plum: Reading supported data from file: /tmp/RtmpluaT2l/working_dir/Rtmp2BK9EE/file2628537ccb29cd/HP1C/HP1C_36.plum, 3 rows, 2 cols. Added det: NA: 371.7+-44666.7 d=0 ResCorr= 1.0+-0.4 a=3 b=4 cc=Plum Added det: Sim-00: 371.7+-5.3 d=1 ResCorr= 1.0+-0.4 a=3 b=4 cc=Plum Added det: Sim-01: 456.4+-7.1 d=2 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-02: 454.2+-8.8 d=3 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-03: 449.6+-7.1 d=4 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-04: 479.0+-8.0 d=5 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-05: 491.0+-8.5 d=6 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-06: 482.1+-8.3 d=7 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-07: 486.9+-7.1 d=8 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-08: 431.6+-7.1 d=9 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-09: 422.8+-8.0 d=10 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-10: 315.3+-6.7 d=11 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-11: 349.8+-7.1 d=12 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-12: 301.7+-6.9 d=13 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-13: 284.4+-5.0 d=14 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-14: 280.6+-6.1 d=15 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-15: 250.2+-4.7 d=16 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-16: 267.7+-6.2 d=17 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-17: 279.3+-5.0 d=18 ResCorr= 1.0+-0.4 a=3 b=4 cc=Plum Added det: Sim-18: 243.8+-4.5 d=19 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-19: 246.8+-5.0 d=20 ResCorr= 1.0+-0.5 a=3 b=4 cc=Plum Added det: Sim-20: 351.7+-11.2 d=21 ResCorr= 1.0+-0.9 a=3 b=4 cc=Plum Added det: Sim-21: 281.3+-10.2 d=22 ResCorr= 1.0+-0.9 a=3 b=4 cc=Plum Added det: Sim-22: 235.3+-12.5 d=23 ResCorr= 1.0+-1.0 a=3 b=4 cc=Plum Added det: Sim-23: 192.8+-6.2 d=24 ResCorr= 1.0+-0.8 a=3 b=4 cc=Plum Added det: Sim-24: 94.3+-3.1 d=25 ResCorr= 1.0+-0.7 a=3 b=4 cc=Plum Added det: Sim-25: 50.5+-2.0 d=26 ResCorr= 1.0+-0.6 a=3 b=4 cc=Plum Added det: Sim-26: 36.1+-1.4 d=27 ResCorr= 1.0+-0.6 a=3 b=4 cc=Plum Added det: Sim-27: 28.7+-1.2 d=28 ResCorr= 1.0+-0.6 a=3 b=4 cc=Plum Added det: Sim-28: 24.7+-1.0 d=29 ResCorr= 1.0+-0.6 a=3 b=4 cc=Plum Added det: Sim-29: 11.0+-4.5 d=35 ResCorr= 1.0+-3.6 a=3 b=4 cc=Plum Added det: Sim-30: 6.2+-4.2 d=-10 ResCorr= 1.0+-4.1 a=3 b=4 cc=Plum Added det: Sim-31: 10.2+-4.5 d=-10 ResCorr= 1.0+-3.5 a=3 b=4 cc=Plum Added det: Sim-32: 8.0+-5.6 d=-10 ResCorr= 1.0+-3.5 a=3 b=4 cc=Plum Added det: NA: 11.0+-355750000.0 d=35.2 ResCorr= 1.0+-3.6 a=3 b=4 cc=Plum Since no file /tmp/RtmpluaT2l/working_dir/Rtmp2BK9EE/file2628537ccb29cd/HP1C/HP1C_36.bacon.init was provided with initial values for the twalk, I will start from simulated values. BaconFixed: Bacon jumps model with fixed c's. K=36, H=0, dim=40, Seed=1745595474, Dc=1.000000, c(0)=0.000000, c(K)=36.000000 twalk: 4000000 iterations to run, Fri Apr 25 16:37:54 2025 BUFSIZ is 8192, optimal block size changed to 4096 twalk: All stored iterations to be saved in file /tmp/RtmpluaT2l/working_dir/Rtmp2BK9EE/file2628537ccb29cd/HP1C/HP1C_36.out twalk: Finished, 1.1% of moved pars per iteration (ratio 44910.575000/4000000). Output in file /tmp/RtmpluaT2l/working_dir/Rtmp2BK9EE/file2628537ccb29cd/HP1C/HP1C_36.out, Fri Apr 25 16:38:13 2025 Writing two last points of the twalk in /tmp/RtmpluaT2l/working_dir/Rtmp2BK9EE/file2628537ccb29cd/HP1C/HP1C_36.bacon.last. bacon: 149248 WarnBeyondLimits warnings: bacon: WARNING: calibration attempted beyond MinYr= -68.500000 or MaxYr= 1000000.000000 bacon: burn in (initial iterations which will be removed): 3000000 Eso es to...eso es to...eso es to...eso es toooodo amigos! Error in if (save.info) assign_to_global("info", set) : argument is of length zero Calls: Plum -> cook -> Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/blackswan/ripley/R/packages/tests-devel/rplum.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 1:36.30, 76.78 + 19.01