* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/rmRNAseq.Rcheck’
* using R Under development (unstable) (2021-07-05 r80600)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘rmRNAseq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rmRNAseq’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rmRNAseq’ can be installed ... [28s/28s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘statmod’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [37s/37s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [16s/16s] OK
* checking examples with --run-donttest ... [13s/13s] ERROR
Running examples in ‘rmRNAseq-Ex.R’ failed
The error most likely occurred in:

> ### Name: NewTimeEst
> ### Title: Estimate New Time Points
> ### Aliases: NewTimeEst
> 
> ### ** Examples
> 
> ## No test: 
> data(res)
> data(covset)
> v <- res$ori.res$v
> v$E <- v$E[1:2,]
> v$weights <- v$weights[1:2,]
> Subject <- covset$ear
> Time <- covset$time
> ncores <- 1
> NewTimeOut <- rmRNAseq:::NewTimeEst(v, Subject, Time, ncores)
Error in mclapply(1:nrow(v$E), function(i) { : 
  argument "ncores" is missing, with no default
Calls: <Anonymous> -> constrOptim -> f -> mclapply
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/rmRNAseq.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:52.61, 218.94 + 12.59