* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/rbi.helpers.Rcheck’
* using R Under development (unstable) (2023-05-14 r84430)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
    GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
* running under: Fedora 34 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘rbi.helpers/DESCRIPTION’ ... OK
* this is package ‘rbi.helpers’ version ‘0.3.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rbi.helpers’ can be installed ... [12s/12s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s/17s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘rbi.helpers-Ex.R’ failed
The error most likely occurred in:

> ### Name: adapt_particles
> ### Title: Adapt the number of particles
> ### Aliases: adapt_particles
> 
> ### ** Examples
> 
> example_obs <- bi_read(system.file(package="rbi", "example_dataset.nc"))
> example_model <- bi_model(system.file(package="rbi", "PZ.bi"))
> example_bi <- libbi(model = example_model, obs = example_obs)
> obs_states <- var_names(example_model, type = "obs")
> max_time <- max(vapply(example_obs[obs_states], function(x) { max(x[["time"]])}, 0))
> ## No test: 
> adapted <- adapt_particles(example_bi, nsamples = 128, end_time = max_time)
Tue May 16 12:45:45 2023 Adapting the number of particles
Tue May 16 12:45:45 2023 Initial trial run
Error in locate_libbi(x$path_to_libbi) : 
  Could not find libbi executable at '/libbi'
Calls: adapt_particles ... <Anonymous> -> sample.libbi -> run.libbi -> locate_libbi
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [12s/12s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/rbi.helpers.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:57.09, 102.99 + 12.96