* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/raymolecule.Rcheck’
* using R Under development (unstable) (2026-02-08 r89381)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-02-08 10:41:53 UTC
* checking for file ‘raymolecule/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘raymolecule’ version ‘0.5.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘raymolecule’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘render_model.R’
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘raymolecule-Ex.R’ failed
The error most likely occurred in:

> ### Name: generate_atom_scene
> ### Title: Build Scene (atoms only)
> ### Aliases: generate_atom_scene
> 
> ### ** Examples
> 
> #Generate a scene with caffeine molecule with just the atoms
> ## No test: 
> get_example_molecule("caffeine") %>%
+   read_sdf() %>%
+   generate_atom_scene() %>%
+   render_model(samples=256,sample_method="sobol_blue")
Error in generate_atom_scene(.) : 
  material() must be either `glossy`, `diffuse`, or `dielectric`
Calls: %>% -> render_model
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/raymolecule.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:09.45, 39.45 + 29.60