* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/rangemap.Rcheck’
* using R Under development (unstable) (2023-03-02 r83925)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
    GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
* running under: Fedora 34 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘rangemap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rangemap’ version ‘0.1.18’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rangemap’ can be installed ... [25s/25s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [34s/34s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 7734 marked UTF-8 strings
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [19s/22s] OK
* checking examples with --run-donttest ... [71s/114s] ERROR
Running examples in ‘rangemap-Ex.R’ failed
The error most likely occurred in:

> ### Name: rangemap_enm
> ### Title: Species distributional ranges based on ENMs/SDMs outputs
> ### Aliases: rangemap_enm
> 
> ### ** Examples
> 
> ## No test: 
> # parameters
> sp_mod <- raster::raster(list.files(system.file("extdata", package = "rangemap"),
+                                     pattern = "sp_model", full.names = TRUE))
> data("occ_train", package = "rangemap")
> 
> thres <- 5
> save <- TRUE
> name <- "test"
> 
> enm_range <- rangemap_enm(model_output = sp_mod, occurrences = occ_train,
+                           threshold_omission = thres)
Error in explodePolygons(x, ...) : 
  legacy Spatial object without polygon comments: please repair first using as(st_as_sf(x), "Spatial")
Calls: rangemap_enm -> <Anonymous> -> <Anonymous> -> explodePolygons
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [10s/11s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/rangemap.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 5:44.07, 279.88 + 17.76