* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/rTLsDeep.Rcheck’
* using R Under development (unstable) (2025-06-17 r88325)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘rTLsDeep/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rTLsDeep’ version ‘0.0.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rTLsDeep’ can be installed ... [27s/28s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [37s/38s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [17s/18s] OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘rTLsDeep-Ex.R’ failed
The error most likely occurred in:

> ### Name: confmatrix_treedamage
> ### Title: Confusion matrix
> ### Aliases: confmatrix_treedamage
> 
> ### ** Examples
> 
> ## No test: 
> # Set directory to tensorflow (python environment)
> # This is required if running deep learning local computer with GPU
> # Guide to install here: https://doi.org/10.5281/zenodo.3929709
> tensorflow_dir = NA
> 
> # define model type
> model_type = "simple"
> #model_type = "vgg"
> #model_type = "inception"
> #model_type = "resnet"
> #model_type = "densenet"
> #model_type = "efficientnet"
> 
> # Image and model properties
> # path to image folders - black
> train_image_files_path <- system.file('extdata', 'train', package='rTLsDeep')
> test_image_files_path <- system.file('extdata', 'validation', package='rTLsDeep')
> img_width <- 256
> img_height <- 256
> class_list_train = unique(list.files(train_image_files_path))
> class_list_test = unique(list.files(test_image_files_path))
> lr_rate = 0.00003
> target_size = c(img_width, img_height)
> channels = 4
> batch_size = 8L
> epochs = 4L
> 
> # get model
> model = get_dl_model(model_type=model_type,
+                     img_width=img_width,
+                     img_height=img_height,
+                     channels=channels,
+                     lr_rate = lr_rate,
+                     tensorflow_dir = tensorflow_dir,
+                     class_list = class_list_train)
Error: Valid installation of TensorFlow not found.

Python environments searched for 'tensorflow' package:
 /usr/bin/python3.12

Python exception encountered:
 Traceback (most recent call last):
  File "/data/blackswan/ripley/R/R-devel/site-library/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
    return _run_hook(name, _hook)
           ^^^^^^^^^^^^^^^^^^^^^^
  File "/data/blackswan/ripley/R/R-devel/site-library/reticulate/python/rpytools/loader.py", line 96, in _run_hook
    module = hook()
             ^^^^^^
  File "/data/blackswan/ripley/R/R-devel/site-library/reticulate/python/rpytools/loader.py", line 120, in _hook
    return _find_and_load(name, import_)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'tensorflow'


You can install TensorFlow using the install_tensorflow() function.
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/rTLsDeep.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 5:02.42, 242.87 + 56.00