* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/quicR.Rcheck’
* using R Under development (unstable) (2025-09-19 r88859)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘quicR/DESCRIPTION’ ... OK
* this is package ‘quicR’ version ‘2.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘quicR’ can be installed ... [11s/12s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [16s/16s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [17s/18s] OK
* checking examples with --run-donttest ... [35s/35s] ERROR
Running examples in ‘quicR-Ex.R’ failed
The error most likely occurred in:

> ### Name: plate_view
> ### Title: Real-Time Plate View
> ### Aliases: plate_view
> 
> ### ** Examples
> 
> # This test takes >5 sec
> ## No test: 
> file <- system.file(
+   "extdata/input_files",
+   file = "test2.xlsx",
+   package = "quicR"
+ )
> 
> # Get the real-time data.
> df_ <- get_real(file, ordered = FALSE)[[1]] |>
+   as.data.frame()
> 
> sample_locations <- get_sample_locations(
+   file,
+   dilution_bool = TRUE,
+   dilution_fun = function(x) -log10(x)
+ )
> 
> plate_view(df_, sample_locations)
Error:
! Providing a labeller with `variable` and `value` arguments was
  deprecated in ggplot2 2.0.0 and is now defunct.
Backtrace:
    ▆
 1. └─quicR::plate_view(df_, sample_locations)
 2.   ├─base::suppressWarnings(...)
 3.   │ └─base::withCallingHandlers(...)
 4.   └─ggplot2::facet_wrap(...)
 5.     └─ggplot2:::validate_labeller(labeller)
 6.       └─lifecycle::deprecate_stop("2.0.0", what = I("Providing a labeller with `variable` and `value` arguments"))
 7.         └─lifecycle:::deprecate_stop0(msg)
 8.           └─rlang::cnd_signal(...)
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [22s/22s]
 [22s/22s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/quicR.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 5:05.45, 194.17 + 106.54