* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/qpNCA.Rcheck’ * using R Under development (unstable) (2024-03-16 r86144) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4) GNU Fortran (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4) * running under: Fedora Linux 38 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘qpNCA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘qpNCA’ version ‘1.1.6’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘qpNCA’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s/13s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking examples with --run-donttest ... ERROR Running examples in ‘qpNCA-Ex.R’ failed The error most likely occurred in: > ### Name: calc.ctmax > ### Title: Calculate Cmax and Tmax > ### Aliases: calc.ctmax > > ### ** Examples > > ## No test: > example(est.thalf) est.th> ## No test: est.th> ##D example(correct.loq) est.th> ##D x %<>% mutate(includeCmax = 'Y') est.th> ##D th <- x %>% est.thalf(by='subject',exclvar=) est.th> ##D th %>% head est.th> ## End(No test) est.th> est.th> est.th> > ctmax <- x %>% calc.ctmax(by = 'subject') Error in x %>% calc.ctmax(by = "subject") : could not find function "%>%" Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [36s/36s] [36s/36s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [62s/63s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/blackswan/ripley/R/packages/tests-devel/qpNCA.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 2:43.86, 149.50 + 12.35