* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/pcvr.Rcheck’
* using R Under development (unstable) (2026-01-18 r89306)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘pcvr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pcvr’ version ‘1.3.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘cmdstanr’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pcvr’ can be installed ... [22s/22s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [45s/46s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [61s/61s] OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘pcvr-Ex.R’ failed
The error most likely occurred in:

> ### Name: barg
> ### Title: Function to help fulfill elements of the Bayesian Analysis
> ###   Reporting Guidelines.
> ### Aliases: barg
> ### Keywords: Bayesian brms prior
> 
> ### ** Examples
> 
> ## No test: 
> simdf <- growthSim("logistic",
+   n = 20, t = 25,
+   params = list("A" = c(200, 160), "B" = c(13, 11), "C" = c(3, 3.5))
+ )
> ss <- growthSS(
+   model = "logistic", form = y ~ time | id / group, sigma = "logistic",
+   df = simdf, start = list(
+     "A" = 130, "B" = 12, "C" = 3,
+     "sigmaA" = 20, "sigmaB" = 10, "sigmaC" = 2
+   ), type = "brms"
+ )
> fit_test <- fitGrowth(ss,
+   iter = 600, cores = 1, chains = 1, backend = "cmdstanr",
+   sample_prior = "only" # only sampling from prior for speed
+ )
Error in `require_package()`:
! Please install the 'cmdstanr' package.
Backtrace:
    ▆
 1. └─pcvr::fitGrowth(...)
 2.   └─pcvr (local) fit_function(ss, ...)
 3.     └─brms::brm(...)
 4.       └─brms:::brmsfit(...)
 5.         └─brms:::require_package("cmdstanr")
 6.           └─brms:::stop2("Please install the '", package, "' package.")
 7.             └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [102s/100s]
 [102s/100s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [182s/172s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/pcvr.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 8:31.93, 474.87 + 47.90