* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/occTest.Rcheck’
* using R Under development (unstable) (2023-03-30 r84126)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
    GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)
* running under: Fedora 34 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘occTest/DESCRIPTION’ ... OK
* this is package ‘occTest’ version ‘0.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages suggested but not available for checking:
  'originr', 'parallelsugar'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘occTest’ can be installed ... [29s/30s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘rnaturalearthdata’ ‘spocc’ ‘tidyverse’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [46s/46s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/13s] OK
* checking examples with --run-donttest ... [14s/18s] ERROR
Running examples in ‘occTest-Ex.R’ failed
The error most likely occurred in:

> ### Name: nativeStatusCtry
> ### Title: Check native and alien ranges in countries
> ### Aliases: nativeStatusCtry
> ### Keywords: internal
> 
> ### ** Examples
> 
> ## No test: 
> #needs spocc library
> df <- spocc::occ(query = 'Pseudotsuga menziesii')
> occ.data <- spocc::occ2df(df)
> nativeStatusCtry(spName = 'Pseudotsuga menziesii',xydat = occ.data[,2:3])
Error in nativeStatusCtry(spName = "Pseudotsuga menziesii", xydat = occ.data[,  : 
  object '"Pseudotsuga menziesii"' not found
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/occTest.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 4:33.67, 251.18 + 16.45