* using log directory ‘/data/localhost/ripley/R/packages/tests-donttest/obm.Rcheck’ * using R Under development (unstable) (2026-08-25 r90447) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-08-25 17:47:22 UTC * checking for file ‘obm/DESCRIPTION’ ... OK * this is package ‘obm’ version ‘2.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘obm’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking examples with --run-donttest ... ERROR Running examples in ‘obm-Ex.R’ failed The error most likely occurred in: > ### Name: obm_init > ### Title: Initialise connection to an OpenBioMaps server > ### Aliases: obm_init > ### Keywords: connect initiate openbiomaps > > ### ** Examples > > ## No test: > # connect with API v3 to the dead_animals project on the default openbiomaps.org server > obm_init(project='dead_animals') [1] TRUE > # connect to a database on the default server (openbiomaps.org) with API v2.5 > obm_init(project='dead_animals', api_version=2.5) Connected to: https://openbiomaps.org/v2.5/pds.php [1] TRUE > # connect on the local server instance to the butterfly database project > obm_init(url='http://localhost/biomaps',project='butterflies') Error in curl::curl_fetch_memory(url, handle = handle) : Could not connect to server [localhost]: Failed to connect to localhost port 80 after 0 ms: Could not connect to server Calls: obm_init ... request_fetch.write_memory -> -> raise_libcurl_error Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-donttest/obm.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 1:39.26, 33.67 + 24.22