* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/nsROC.Rcheck’
* using R Under development (unstable) (2024-03-16 r86144)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4)
    GNU Fortran (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4)
* running under: Fedora Linux 38 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘nsROC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘nsROC’ version ‘1.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nsROC’ can be installed ... [12s/12s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [22s/22s] OK
* checking Rd files ... NOTE
checkRd: (-1) ROCbands.Rd:56: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ROCbands.Rd:64: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ROCbands.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cdROC.Rd:62: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cdROC.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cdROC.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cdROC.Rd:78: Lost braces in \itemize; meant \describe ?
checkRd: (-1) cdROC.Rd:82: Lost braces in \itemize; meant \describe ?
checkRd: (-1) checkROC.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) checkROC.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) checkROC.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) checkROC.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) checkROC.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compareROCdep.Rd:91: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compareROCdep.Rd:95: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compareROCdep.Rd:99: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compareROCdep.Rd:103: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compareROCindep.Rd:88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compareROCindep.Rd:94: Lost braces in \itemize; meant \describe ?
checkRd: (-1) compareROCindep.Rd:100: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metaROC.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metaROC.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metaROC.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metaROC.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metaROC.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) metaROC.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) metaROC.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) metaROC.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) metaROC.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [11s/11s] OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘nsROC-Ex.R’ failed
The error most likely occurred in:

> ### Name: ROCbands
> ### Title: Confidence bands for ROC curves
> ### Aliases: ROCbands ROCbands.default
> ### Keywords: confidence
> 
> ### ** Examples
> 
> # Basic example
> set.seed(123)
> X <- c(rnorm(45), rnorm(30,2,1.5))
> D <- c(rep(0,45), rep(1,30))
> groc.obj <- gROC(X,D)
> 
> # PSN confidence bands with conf.level=0.95
> ROCbands(groc.obj)
The method considered to build confidence bands is the one proposed in Martinez-Camblor et al. (2016).
Confidence level (1-alpha): 0.95.
Bootstrap replications: 500.
Scale parameter (bandwidth construction): 1.
The optimal confidence band is reached for alpha1 = 0.005 and alpha2 = 0.045.
The area between the confidence bands is 0.263 (theoretically 0.3826).
> ## No test: 
> # Plot standard deviation estimate of the curve and confidence bands in the same window
> ROCbands(groc.obj, plot.bands=TRUE, plot.var=TRUE)
The method considered to build confidence bands is the one proposed in Martinez-Camblor et al. (2016).
Confidence level (1-alpha): 0.95.
Bootstrap replications: 500.
Scale parameter (bandwidth construction): 1.
The optimal confidence band is reached for alpha1 = 0.005 and alpha2 = 0.045.
The area between the confidence bands is 0.263 (theoretically 0.3826).
> # PSN confidence bands with alpha1 fixed (alpha1=0.025)
> ROCbands(groc.obj, alpha1=0.025)
The method considered to build confidence bands is the one proposed in Martinez-Camblor et al. (2016).
Confidence level (1-alpha): 0.95.
Bootstrap replications: 500.
Scale parameter (bandwidth construction): 1.
alpha1: 0.025.
The area between the confidence bands is 0.2454 (theoretically 0.3861).
> 
> # JMS confidence bands in (0.2,0.7) interval
> ROCbands(groc.obj, method="JMS", a.J=0.2, b.J=0.7)
Error in ROCbands.default(groc.obj, method = "JMS", a.J = 0.2, b.J = 0.7) : 
  b.J value must be stated in function of Ni value.
Calls: ROCbands -> ROCbands.default
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/nsROC.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:52.24, 100.19 + 11.13