* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/nontarget.Rcheck’
* using R Under development (unstable) (2022-02-09 r81684)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘nontarget/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘nontarget’ version ‘1.9’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nontarget’ can be installed ... [19s/19s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [22s/22s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [84s/84s] ERROR
Running examples in ‘nontarget-Ex.R’ failed
The error most likely occurred in:

> ### Name: deter.iso
> ### Title: Generating list of type iso from filtered m/z differences.
> ### Aliases: deter.iso
> 
> ### ** Examples
> 
> ## No test: 
> data(peaklist)
> diffs<-plotdiff(peaklist, histbreaks = 10000, rttol = c(0, 0), mztol = c(0.3, 100), plotit = TRUE);

 Screen m/z ... please wait!
> iso<-deter.iso(diffs,histbreaks=10000,mzmin=0,mzmax=40,cutcount=500,plotit=TRUE);

 For using deter.iso-output in function pattern.search:
(1) set deter=TRUE.
(2) set ppm=FALSE.
(3) use mztol=0.005.

> pattern<-pattern.search(
+   peaklist,
+   iso,
+   cutint=10000,
+   rttol=c(-0.05,0.05),
+   mztol=0.005,
+   mzfrac=0.1,
+   ppm=FALSE,
+   inttol=0.2,
+   #rules=c(FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE),
+   rules=c(TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE),
+   deter=TRUE,
+   entry=50
+ );

 (1) Assemble lists ... done.
 (2) Screen for mass increments ... Error in pattern.search(peaklist, iso, cutint = 10000, rttol = c(-0.05,  : 
  vector is too large
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/nontarget.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:42.35, 154.32 + 6.88