* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/nhdplusTools.Rcheck’ * using R Under development (unstable) (2024-03-26 r86206) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7) GNU Fortran (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7) * running under: Fedora Linux 38 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘nhdplusTools/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘nhdplusTools’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘nhdplusTools’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [14s/14s] OK * checking Rd files ... NOTE checkRd: (-1) get_huc.Rd:25: Lost braces 25 | See /link{download_nhdplusv2} for documentation of that dataset.} | ^ checkRd: (-1) get_huc12.Rd:15: Lost braces 15 | See /link{download_nhdplusv2} for documentation of that dataset.} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [11s/12s] OK * checking examples with --run-donttest ... [75s/170s] ERROR Running examples in ‘nhdplusTools-Ex.R’ failed The error most likely occurred in: > ### Name: rescale_catchment_characteristics > ### Title: Rescale Catchment Characteristics > ### Aliases: rescale_catchment_characteristics > > ### ** Examples > > ## No test: > vars <- data.frame(characteristic_id = c("CAT_IMPV11","CAT_BASIN_AREA"), + summary_statistic = c("area_weighted_mean","sum")) > lookup_table <- data.frame(id = rep(10012268, 2), + comid = c(4146596, 4147382), + member_comid = c(4146596, 4147382)) > rescale_catchment_characteristics(vars, lookup_table) Warning in get_catchment_characteristics(varname = vars$characteristic_id, : Issue getting characteristics. Error was: NotImplemented: Got S3 URI but Arrow compiled without S3 supportIssue getting characteristics. Error was: NULL Error in UseMethod("pivot_wider") : no applicable method for 'pivot_wider' applied to an object of class "NULL" Calls: rescale_catchment_characteristics -> pivot_wider Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [41s/22s] [42s/22s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [17s/17s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/blackswan/ripley/R/packages/tests-devel/nhdplusTools.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 4:55.73, 204.74 + 14.34