* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/neurocInstall.Rcheck’
* using R Under development (unstable) (2024-10-21 r87252)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7)
    GNU Fortran (GCC) 13.2.1 20240316 (Red Hat 13.2.1-7)
* running under: Fedora Linux 38 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘neurocInstall/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘neurocInstall’ version ‘0.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘neurocInstall’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking LazyData ... INFO
  'LazyData' is specified without a 'data' directory
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [18s/21s] ERROR
Running examples in ‘neurocInstall-Ex.R’ failed
The error most likely occurred in:

> ### Name: neuro_install
> ### Title: Neuroconductor Installer
> ### Aliases: neuro_install neuroc_install neurocLite
> 
> ### ** Examples
> 
> ## No test: 
>    tlib = tempfile()
>    dir.create(tlib, showWarnings = FALSE)
>    system.time({
+    install.packages("oro.asl",
+    lib = tlib,
+    repos = "https://neuroconductor.org/releases/2019/12/")
+    })
trying URL 'https://neuroconductor.org/releases/2019/12/src/contrib/oro.asl_0.1.1.tar.gz'
Content type 'application/x-gzip' length 3456 bytes
==================================================
downloaded 3456 bytes

* installing *source* package ‘oro.asl’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (oro.asl)

The downloaded source packages are in
	‘/tmp/Rtmpfew4Li/working_dir/Rtmp4e4dPD/downloaded_packages’
   user  system elapsed 
 10.761   1.560  13.531 
>    repos = getOption("repos")
>    print(repos)
    CRAN 
"@CRAN@" 
>    #if (repos["CRAN"] == "@CRAN@") {
>    #    repos["CRAN"] = "https://cloud.r-project.org"
>    #    options(repos = repos)
>    #}
>    options(repos = NULL)
>    print(getOption("repos"))
NULL
>    neuro_install("oro.asl", lib = tlib,
+    release_repo = "https://neuroconductor.org/releases/2019/12")
trying URL 'https://neuroconductor.org/releases/2019/12/src/contrib/oro.asl_0.1.1.tar.gz'
Content type 'application/x-gzip' length 3456 bytes
==================================================
downloaded 3456 bytes

* installing *source* package ‘oro.asl’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (oro.asl)

The downloaded source packages are in
	‘/tmp/Rtmpfew4Li/working_dir/Rtmp4e4dPD/downloaded_packages’
>    options(repos = repos)
>  
> ## End(No test)
> ## No test: 
>    neuro_install("cifti", type = "source", lib = tlib)
Error in utils::contrib.url(repos, type) : 
  trying to use CRAN without setting a mirror
Calls: neuro_install -> <Anonymous>
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [13s/13s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/neurocInstall.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:58.68, 98.32 + 13.97