* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/nFunNN.Rcheck’ * using R Under development (unstable) (2025-11-17 r89032) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘nFunNN/DESCRIPTION’ ... OK * this is package ‘nFunNN’ version ‘1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘nFunNN’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘stats’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking examples with --run-donttest ... [30m/26m] ERROR Running examples in ‘nFunNN-Ex.R’ failed The error most likely occurred in: > ### Name: nFunNNmodel > ### Title: Nonlinear FPCA using neural networks > ### Aliases: nFunNNmodel > > ### ** Examples > > ## No test: > n <- 2000 > m <- 51 > t_grid <- seq(0, 1, length.out = m) > m_est <- 101 > t_grid_est <- seq(0, 1, length.out = m_est) > err_sd <- 0.1 > Z_1a <- stats::rnorm(n, 0, 3) > Z_2a <- stats::rnorm(n, 0, 2) > Z_a <- cbind(Z_1a, Z_2a) > Phi <- cbind(sin(2 * pi * t_grid), cos(2 * pi * t_grid)) > Phi_est <- cbind(sin(2 * pi * t_grid_est), cos(2 * pi * t_grid_est)) > X <- Z_a %*% t(Phi) > X_to_est <- Z_a %*% t(Phi_est) > X_ob <- X + matrix(stats::rnorm(n * m, 0, err_sd), nr = n, nc = m) > L_smooth <- 10 > L <- 10 > J <- 20 > K <- 2 > R <- 20 > nFunNN_res <- nFunNNmodel(X_ob, t_grid, t_grid_est, L_smooth, + L, J, K, R, lr = 0.001, n_epoch = 1500, batch_size = 100) * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/blackswan/ripley/R/packages/tests-devel/nFunNN.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 27:11.27, 1822.19 + 36.45