* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/motif.Rcheck’
* using R Under development (unstable) (2025-03-15 r87978)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘motif/DESCRIPTION’ ... OK
* this is package ‘motif’ version ‘0.6.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘motif’ can be installed ... [113s/118s] OK
* used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [19s/21s] OK
* checking examples with --run-donttest ... [72s/75s] ERROR
Running examples in ‘motif-Ex.R’ failed
The error most likely occurred in:

> ### Name: lsp_extract
> ### Title: Extracts a local landscape
> ### Aliases: lsp_extract
> 
> ### ** Examples
> 
> library(stars)
Loading required package: abind
Loading required package: sf
Linking to GEOS 3.12.2, GDAL 3.8.5, PROJ 9.3.1; sf_use_s2() is TRUE
> landform = read_stars(system.file("raster/landforms.tif", package = "motif"))
> ecoregions = read_sf(system.file("vector/ecoregionss.gpkg", package = "motif"))
> 
> extract1 = lsp_extract(x = landform, window = 100, id = 25)
> plot(extract1)
> 
> ecoregions = st_transform(ecoregions, st_crs(landform))
> extract2 = lsp_extract(x = landform, window = ecoregions["id"], id = 11)
> plot(extract2)
> 
> ## No test: 
> # larger data example
> library(stars)
> landform = read_stars(system.file("raster/landform.tif", package = "motif"))
> ecoregions = read_sf(system.file("vector/ecoregions.gpkg", package = "motif"))
> 
> extract1 = lsp_extract(x = landform, window = 100, id = 1895)
> plot(extract1)
Error in .External.graphics(C_strWidth, as.graphicsAnnot(s), pmatch(units,  : 
  invalid graphics state
Calls: plot ... tryCatchList -> tryCatchOne -> <Anonymous> -> cm -> strwidth
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [39s/41s]
 [39s/42s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [42s/44s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/motif.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 6:19.78, 295.78 + 65.05