* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/motif.Rcheck’ * using R Under development (unstable) (2025-04-24 r88177) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘motif/DESCRIPTION’ ... OK * this is package ‘motif’ version ‘0.6.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘motif’ can be installed ... [66s/60s] OK * used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [11s/11s] OK * checking examples with --run-donttest ... [43s/43s] ERROR Running examples in ‘motif-Ex.R’ failed The error most likely occurred in: > ### Name: lsp_extract > ### Title: Extracts a local landscape > ### Aliases: lsp_extract > > ### ** Examples > > library(stars) Loading required package: abind Loading required package: sf Linking to GEOS 3.12.2, GDAL 3.8.5, PROJ 9.3.1; sf_use_s2() is TRUE > landform = read_stars(system.file("raster/landforms.tif", package = "motif")) > ecoregions = read_sf(system.file("vector/ecoregionss.gpkg", package = "motif")) > > extract1 = lsp_extract(x = landform, window = 100, id = 25) > plot(extract1) > > ecoregions = st_transform(ecoregions, st_crs(landform)) > extract2 = lsp_extract(x = landform, window = ecoregions["id"], id = 11) > plot(extract2) > > ## No test: > # larger data example > library(stars) > landform = read_stars(system.file("raster/landform.tif", package = "motif")) > ecoregions = read_sf(system.file("vector/ecoregions.gpkg", package = "motif")) > > extract1 = lsp_extract(x = landform, window = 100, id = 1895) > plot(extract1) Error in .External.graphics(C_strWidth, as.graphicsAnnot(s), pmatch(units, : invalid graphics state Calls: plot ... tryCatchList -> tryCatchOne -> <Anonymous> -> cm -> strwidth Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [21s/21s] [21s/21s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [26s/26s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/blackswan/ripley/R/packages/tests-devel/motif.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 3:28.08, 171.92 + 40.51