* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/modnets.Rcheck’ * using R Under development (unstable) (2026-01-24 r89326) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘modnets/DESCRIPTION’ ... OK * this is package ‘modnets’ version ‘0.9.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘modnets’ can be installed ... [37s/38s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [80s/81s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [40s/40s] OK * checking examples with --run-donttest ... [51s/52s] ERROR Running examples in ‘modnets-Ex.R’ failed The error most likely occurred in: > ### Name: bootNet > ### Title: Bootstrapping network estimation for moderated networks > ### Aliases: bootNet > > ### ** Examples > > ## No test: > boot1 <- bootNet(ggmDat, 'M') | | | 0% | |====== | 9% | |============= | 18% | |=================== | 27% | |========================= | 36% | |================================ | 45% | |====================================== | 55% | |============================================= | 64% | |=================================================== | 73% | |========================================================= | 82% | |================================================================ | 91% | |======================================================================| 100%> summary(boot1) cor mae sensitivity specificity precision accuracy N p 1 0.9957781 0.014652306 1 0 1 1 5000 5 2 0.9981820 0.009675657 1 0 1 1 5000 5 3 0.9992006 0.006629587 1 0 1 1 5000 5 4 0.9972514 0.009099462 1 0 1 1 5000 5 5 0.9980799 0.009269224 1 0 1 1 5000 5 6 0.9921580 0.018375889 1 0 1 1 5000 5 7 0.9973635 0.009715662 1 0 1 1 5000 5 8 0.9978374 0.008646924 1 0 1 1 5000 5 9 0.9956267 0.014570120 1 0 1 1 5000 5 10 0.9987412 0.007213132 1 0 1 1 5000 5 11 0.9914812 0.010186631 1 0 1 1 5000 5 12 0.9898483 0.011201955 1 0 1 1 5000 5 13 0.9952037 0.008279070 1 0 1 1 5000 5 14 0.9953281 0.007590913 1 0 1 1 5000 5 15 0.9930911 0.010632377 1 0 1 1 5000 5 16 0.9867028 0.012282624 1 0 1 1 5000 5 17 0.9923446 0.010601533 1 0 1 1 5000 5 18 0.9910848 0.010150995 1 0 1 1 5000 5 19 0.9929340 0.009495265 1 0 1 1 5000 5 20 0.9888424 0.010771616 1 0 1 1 5000 5 sparsity index iter type network strength EI 1 0 1 1 Pairwise Between 0.9914701 0.9938302 2 0 1 2 Pairwise Between 0.9955170 0.9961215 3 0 1 3 Pairwise Between 0.9988681 0.9976550 4 0 1 4 Pairwise Between 0.9916357 0.9973132 5 0 1 5 Pairwise Between 0.9949838 0.9941279 6 0 1 6 Pairwise Between 0.9983294 0.9990350 7 0 1 7 Pairwise Between 0.9953878 0.9995708 8 0 1 8 Pairwise Between 0.9991168 0.9895511 9 0 1 9 Pairwise Between 0.9939727 0.9768744 10 0 1 10 Pairwise Between 0.9967866 0.9951532 11 0 1 1 Interactions Between 0.9979432 0.9981269 12 0 1 2 Interactions Between 0.9977110 0.9931928 13 0 1 3 Interactions Between 0.9995551 0.9908449 14 0 1 4 Interactions Between 0.9912428 0.9972270 15 0 1 5 Interactions Between 0.9967584 0.9985077 16 0 1 6 Interactions Between 0.9976087 0.9798461 17 0 1 7 Interactions Between 0.9883024 0.9965329 18 0 1 8 Interactions Between 0.9949251 0.9882990 19 0 1 9 Interactions Between 0.9995769 0.9962422 20 0 1 10 Interactions Between 0.9792160 0.9891892 > > boot2 <- bootNet(gvarDat, 'M', lags = 1) | | | 0% | |====== | 9% | |============= | 18% | |=================== | 27% | |========================= | 36% | |================================ | 45% | |====================================== | 55% | |============================================= | 64% | |=================================================== | 73% | |========================================================= | 82% | |================================================================ | 91% | |======================================================================| 100%> > mod1 <- varSelect(gvarDat, 'M', lags = 1) Fitting model 1/5... Complete! (0.84 secs) Fitting model 2/5... Complete! (0.19 secs) Fitting model 3/5... Complete! (2.51 secs) Fitting model 4/5... Complete! (0.34 secs) Fitting model 5/5... Complete! (1.3 secs) ####### Total time: 5.19 secs > boot3 <- bootNet(gvarDat, 'M', lags = 1, type = mod1, caseDrop = TRUE) | | | 0% | |====== | 9% | |============= | 18% | |=================== | 27% | |========================= | 36% | |================================ | 45% | |====================================== | 55% | |============================================= | 64% | |=================================================== | 73% | |========================================================= | 82% | |================================================================ | 91% | |======================================================================| 100%> summary(boot3) Error in attr(out, c("cor", "ci", "first")) <- c(cor, ci0/100, first) : 'name' must be a scalar string Calls: summary ... summary.bootNet -> cscoef -> do.call -> Execution halted * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/blackswan/ripley/R/packages/tests-devel/modnets.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 5:45.17, 291.11 + 51.08