* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/mmeta.Rcheck’
* using R Under development (unstable) (2025-11-17 r89032)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘mmeta/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mmeta’ version ‘3.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mmeta’ can be installed ... [13s/13s] OK
* used C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* used Fortran compiler: ‘GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/20s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [89s/93s] ERROR
Running examples in ‘mmeta-Ex.R’ failed
The error most likely occurred in:

> ### Name: MultipleTables.modelFit
> ### Title: Exact posterior inference based on multiple 2x2 tables.
> ### Aliases: MultipleTables.modelFit
> 
> ### ** Examples
> 
> ## No test: 
>  library(mmeta)
>  library(ggplot2)
>  ## Analyze the dataset colorectal to conduct exact inference of the odds ratios
>  data(colorectal)
>  colorectal['study_name'] <- colorectal['studynames']
>  # ########################## If exact method is used ############################
>  ## Create object multiple_tables_obj_exact
>  multiple_tables_obj_exact <- MultipleTables.create(data=colorectal,
+  measure='OR', model= 'Sarmanov')
>  ## Model fit default
>  multiple_tables_obj_exact <- MultipleTables.modelFit(
+  multiple_tables_obj_exact, method = 'exact')

 *** caught segfault ***
address 0x98, cause 'memory not mapped'

Traceback:
 1: hypergeoFun(alpha2 + beta2, alpha1 + alpha2, alpha1 + alpha2 +     beta1 + beta2, 1 - theta)
 2: withCallingHandlers(expr, warning = function(w) if (inherits(w,     classes)) tryInvokeRestart("muffleWarning"))
 3: suppressWarnings(((-1 + alpha2) * log(theta) - (lgamma(alpha1) +     lgamma(beta1) + lgamma(alpha2) + lgamma(beta2) + lgamma(alpha1 +     beta1 + alpha2 + beta2)) + (lgamma(alpha1 + beta1) + lgamma(alpha2 +     beta2) + lgamma(alpha1 + alpha2) + lgamma(beta1 + beta2)) +     log(hypergeoFun(alpha2 + beta2, alpha1 + alpha2, alpha1 +         alpha2 + beta1 + beta2, 1 - theta))))
 4: densityIndendentOR(alpha1, beta1, alpha2, beta2, theta)
 5: densitySarmanovOR(alpha1, beta1, alpha2, beta2, theta, omega1,     omega2, omega3, omega4)
 6: densitySarmanovMeasure(theta = theta, a1 = a1, b1 = b1, a2 = a2,     b2 = b2, rho = rho, y1 = y1, y2 = y2, n1 = n1, n2 = n2, measure = measure)
 7: densityMeasure(theta = theta_grids[i], a1 = parms_prior$a1, b1 = parms_prior$b1,     a2 = parms_prior$a2, b2 = parms_prior$b2, rho = parms_prior$rho,     y1 = data$y1, y2 = data$y2, n1 = data$n1, n2 = data$n2, measure = measure,     model = model)
 8: densityMeasureGrids(parms_prior = vectorToList(multiple_tables_object$prior_mle),     data = list(y1 = mydata[study_id, "y1"], n1 = mydata[study_id,         "n1"], y2 = mydata[study_id, "y2"], n2 = mydata[study_id,         "n2"]), model = multiple_tables_object$model, measure = multiple_tables_object$measure,     from = control$lower_bound, to = control$upper_bound, num_grids = control$num_grids)
 9: MultipleTables._studySpecificPosteriorDensity(multiple_tables_object,     control)
10: MultipleTables.modelFit(multiple_tables_obj_exact, method = "exact")
An irrecoverable exception occurred. R is aborting now ...
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/mmeta.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 3:15.24, 166.79 + 20.79