* using log directory ‘/data/localhost/ripley/R/packages/tests-donttest/manydata.Rcheck’ * using R Under development (unstable) (2026-08-24 r90445) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2) * running under: Fedora Linux 44 (Server Edition) * using session charset: UTF-8 * current time: 2026-08-25 14:07:14 UTC * checking for file ‘manydata/DESCRIPTION’ ... OK * this is package ‘manydata’ version ‘1.1.3’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘manydata’ can be installed ... [14s/18s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [19s/22s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking examples ... [10s/10s] OK * checking examples with --run-donttest ... [17s/18s] ERROR Running examples in ‘manydata-Ex.R’ failed The error most likely occurred in: > ### Name: consolidate > ### Title: Consolidate datacube into a single dataset > ### Aliases: consolidate > > ### ** Examples > > ## No test: > consolidate(emperors, join = "full", resolve = "coalesce", key = "ID") Using `ID` for matching observations across datasets... ✔ Matched 151 observations by `ID` variable in `emperors` datasets. Using `ID` for matching observations across datasets... Joining 3 datasets using a full join... ✔ Joined 3 datasets using a full join. Joining 3 datasets using a full join... Found 12 conflicts to resolve by `coalesce()`... ✔ Resolved 3 related variables into `Begin`. Found 12 conflicts to resolve by `coalesce()`... ✔ Resolved 3 related variables into `End`. Found 12 conflicts to resolve by `coalesce()`... ✔ Resolved 2 related variables into `FullName`. Found 12 conflicts to resolve by `coalesce()`... ✔ Resolved 2 related variables into `Birth`. Found 12 conflicts to resolve by `coalesce()`... Error in `mutate()`: ℹ In argument: `Death = get(funny)(out, all_of(vars))`. Caused by error in `dplyr::mutate()`: ℹ In argument: `dplyr::coalesce(...)`. Caused by error: ! mdate object requires at least one specified date component. in: [78] ? Backtrace: ▆ 1. ├─manydata::consolidate(...) 2. │ └─... %>% select(-all_of(setdiff(vars, var))) 3. ├─dplyr::select(., -all_of(setdiff(vars, var))) 4. ├─dplyr::mutate(...) 5. ├─dplyr:::mutate.data.frame(., `:=`("{var}", get(funny)(out, all_of(vars))), .keep = "unused") 6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by) 7. │ ├─base::withCallingHandlers(...) 8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns) 9. │ └─mask$eval_all_mutate(quo) 10. │ └─dplyr (local) eval() 11. ├─get(funny)(out, all_of(vars)) 12. │ └─... %>% dplyr::pull(var = -1) 13. ├─dplyr::pull(., var = -1) 14. ├─dplyr::mutate(., dplyr::coalesce(!!!as.data.frame(toCoal))) 15. ├─dplyr:::mutate.data.frame(., dplyr::coalesce(!!!as.data.frame(toCoal))) 16. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by) 17. │ ├─base::withCallingHandlers(...) 18. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns) 19. │ └─mask$eval_all_mutate(quo) 20. │ └─dplyr (local) eval() 21. ├─dplyr::coalesce(Death.x = ``, Death.y = ``) 22. │ └─vctrs::vec_case_when(...) 23. ├─vctrs:::base_c_invoke(``) at vctrs/R/case-when.R:188:3 24. │ └─vctrs:::base_c(xs) at vctrs/R/list-combine.R:249:5 25. │ └─rlang::exec("c", !!!xs, .env = ns_env("base")) at vctrs/R/list-combine.R:270:3 26. ├─base::c(``, ``) 27. ├─messydates:::c.mdate(``, ``) 28. │ └─messydates::validate_messydate(x) 29. │ └─messydates (local) fail(!grepl("[0-9]", values), "mdate object requires at least one specified date component.") 30. │ └─base::stop(...) 31. └─base::.handleSimpleError(...) 32. └─dplyr (local) h(simpleError(msg, call)) 33. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [25s/20s] [26s/21s] OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR See ‘/data/localhost/ripley/R/packages/tests-donttest/manydata.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 3:59.80, 169.21 + 36.20