* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/lmvar.Rcheck’ * using R Under development (unstable) (2023-03-24 r84037) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2) GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2) * running under: Fedora 34 (Workstation Edition) * using session charset: UTF-8 * checking for file ‘lmvar/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘lmvar’ version ‘1.5.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘lmvar’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking examples with --run-donttest ... ERROR Running examples in ‘lmvar-Ex.R’ failed The error most likely occurred in: > ### Name: cv.lm > ### Title: Cross-validation for an object of class 'lm' > ### Aliases: cv.lm > > ### ** Examples > > # Create an object of class 'lm'. We use a model matrix obtained from the 'cats' dataframe, > # an arbitrary parameter vector beta and a generated response vector y for the purpose of the > # example. > library(MASS) > > X = model.matrix(~ Sex + Bwt, cats) > beta_mu = c(-0.1, 0.3, 4) > > mu = X %*% beta_mu > > y = rnorm( nrow(X), mean = mu, sd = 0.5) > > fit = lm(y ~ ., as.data.frame(X[,-1]), x = TRUE, y = TRUE) > > # Carry out a cross-validation > ## No test: > cv.lm(fit) Error in .check_ncores(length(names)) : 31 simultaneous processes spawned Calls: cv.lm -> -> makePSOCKcluster -> .check_ncores Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [15s/36s] [15s/37s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [13s/13s] OK * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * checking for new files in some other directories ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/blackswan/ripley/R/packages/tests-devel/lmvar.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 1:31.11, 56.44 + 8.29