* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/glmmboot.Rcheck’
* using R Under development (unstable) (2021-07-28 r80671)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘glmmboot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘glmmboot’ version ‘0.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘glmmTMB’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘glmmboot’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘glmmboot-Ex.R’ failed
The error most likely occurred in:

> ### Name: bootstrap_ci
> ### Title: Generating bootstrap confidence intervals.
> ### Aliases: bootstrap_ci
> 
> ### ** Examples
> 
> x <- rnorm(20)
> y <- rnorm(20) + x
> xy_data = data.frame(x = x, y = y)
> first_model <- lm(y ~ x, data = xy_data)
> out_list <- bootstrap_model(first_model, base_data = xy_data, 20,
+                            return_coefs_instead = TRUE)
> bootstrap_ci(out_list$base_coef_se,
+              out_list$resampled_coef_se)
              estimate boot 2.5% boot 97.5% boot p_value base p_value base 2.5%
(Intercept) 0.03307125   -0.5352     0.4289       0.9524       0.8685   -0.3586
x           0.79245241   -0.0948     1.5625       0.1905       0.0003    0.3622
            base 97.5% boot/base width
(Intercept)     0.4247        1.230949
x               1.2227        1.926068
> 
> ## No test: 
>   data(test_data)
>   library(glmmTMB)
Error in library(glmmTMB) : there is no package called ‘glmmTMB’
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [1s/11s] OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/glmmboot.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 0:29.98, 15.93 + 3.72