* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/genSEIR.Rcheck’
* using R Under development (unstable) (2026-05-01 r89993)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* current time: 2026-05-01 15:09:22 UTC
* checking for file ‘genSEIR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genSEIR’ version ‘0.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘genSEIR’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [58s/59s] ERROR
Running examples in ‘genSEIR-Ex.R’ failed
The error most likely occurred in:

> ### Name: plot_SEIQRDP
> ### Title: Plots for Epidemic Curves
> ### Aliases: plot_SEIQRDP
> 
> ### ** Examples
> 
> ## No test: 
>  alpha_guess = 0.45
>  beta_guess = 1
>  LT_guess = 2
>  Q_guess = 0.55
>  lambda_guess = c(0.01,0.01,30)
>  kappa_guess = c(0.01,0.001,30)
> 
>  guess = list(alpha_guess,
+               beta_guess,
+               1/LT_guess,
+               Q_guess,
+               lambda_guess[1],
+               lambda_guess[2],
+               lambda_guess[3],
+               kappa_guess[1],
+               kappa_guess[2],
+               kappa_guess[3])
> 
>  pred = predict_SEIQRDP(country = "Germany", start = "10/15/20", finish = "12/15/20",
+                         dt = 1, f = 30, conf = 0.95, Npop = 80000000, guess, boot = TRUE,
+                         seed = 123, repeatNumber = 10, bootSample = NULL, type = "norm")
It.    0, RSS =        nan, Par. =       0.45          1        0.5       0.55   0.165585  0.0102537        100  0.000861169   0.324644        100
Warning in SEIQRDP_for_fitting(p, t11, t00, Npop, E0, I0, Q, R, D, dt) :
  lambda is abnormally high
Error in approx(x, y, xi, method = method) : 
  need at least two non-NA values to interpolate
Calls: predict_SEIQRDP ... <Anonymous> -> fn -> SEIQRDP_for_fitting -> interp1 -> approx
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/genSEIR.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:00.36, 101.37 + 17.09