* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/gen5helper.Rcheck’
* using R Under development (unstable) (2024-03-16 r86144)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4)
    GNU Fortran (GCC) 13.2.1 20231011 (Red Hat 13.2.1-4)
* running under: Fedora Linux 38 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘gen5helper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gen5helper’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gen5helper’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘ggplot2’ ‘pracma’ ‘rlang’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking LazyData ... NOTE
  'LazyData' is specified without a 'data' directory
* checking examples ... OK
* checking examples with --run-donttest ... ERROR
Running examples in ‘gen5helper-Ex.R’ failed
The error most likely occurred in:

> ### Name: g5h.annotate
> ### Title: Annotate a cleaned dataset
> ### Aliases: g5h.annotate
> 
> ### ** Examples
> 
> ## No test: 
> # suppose "gen5_export.txt" is the export from Gen5 2.06
> 
> g5h.clean2("gen5_export.txt") %>%
+     g5h.annotate()
Warning in file(con, "r") :
  cannot open file 'gen5_export.txt': No such file or directory
Error in file(con, "r") : cannot open the connection
Calls: %>% ... list2 -> lapply -> FUN -> g5h.clean_ -> readLines -> file
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/gen5helper.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 0:49.61, 41.84 + 7.33