* using log directory ‘/data/blackswan/ripley/R/packages/tests-devel/gammaFuncModel.Rcheck’
* using R Under development (unstable) (2025-12-08 r89124)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* checking for file ‘gammaFuncModel/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gammaFuncModel’ version ‘5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gammaFuncModel’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking examples with --run-donttest ... [15m/16m] ERROR
Running examples in ‘gammaFuncModel-Ex.R’ failed
The error most likely occurred in:

> ### Name: diffGrpResponse_parallel
> ### Title: Parallelized version of diffGrpResponse()
> ### Aliases: diffGrpResponse_parallel
> 
> ### ** Examples
> 
> ## No test: 
> require(gammaFuncModel)
> require(dplyr)
Loading required package: dplyr

Attaching package: ‘dplyr’

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

> require(nlme)
Loading required package: nlme

Attaching package: ‘nlme’

The following object is masked from ‘package:dplyr’:

    collapse

> df <- data.frame(
+   ID = rep(sprintf("%02d", 1:10), each = 9 * 3),  
+   Time = rep(rep(1:9, each = 3), 10),             
+   Diet = as.factor(rep(1:3, times = 9 * 10)),     
+   Age = rep(sample(20:70, 10, replace = TRUE), each = 9 * 3), 
+   BMI = round(rep(runif(10, 18.5, 35), each = 9 * 3), 1)     
+ )
> metvar <- paste0("met", 1:10)
> concentration_data <- replicate(10, round(runif(270, 5, 15), 2))
> colnames(concentration_data) <- metvar[1:10]
> df <- cbind(df, as.data.frame(concentration_data))
> covariates <- c("ID", "Diet", "Age", "BMI")
> library(future.apply)
Loading required package: future
> plan(multisession, workers = parallel::detectCores() - 1)
Error in checkNumberOfLocalWorkers(workers) : 
  Attempting to set up 31 localhost parallel workers with only 2 CPU cores available for this R process (per ‘mc.cores’), which could result in a 1550% load. The hard limit is set to 300%. Overusing the CPUs has negative impact on the current R process, but also on all other processes of yours and others running on the same machine. See help("parallelly.maxWorkers.localhost", package = "parallelly") for further explanations and how to override the hard limit that triggered this error
Calls: plan ... do.call -> <Anonymous> -> checkNumberOfLocalWorkers
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* checking for new files in some other directories ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/blackswan/ripley/R/packages/tests-devel/gammaFuncModel.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 16:33.03, 970.27 + 15.98